5OYH | pdb_00005oyh

crystal structure of the catalytic core of a rhodopsin-guanylyl cyclase with converted specificity in complex with ATPalphaS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5oyha_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
C	d5oyhc_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
D	d5oyhd_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
J	d5oyhj_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
K	d5oyhk_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
L	d5oyhl_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
M	d5oyhm_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
N	d5oyhn_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
O	d5oyho_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
P	d5oyhp_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
I	d5oyhi_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
H	d5oyhh_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
G	d5oyhg_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
F	d5oyhf_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
E	d5oyhe_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)
B	d5oyhb_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleotide cyclase	automated matches	automated matches	(Catenaria anguillulae PL171 ) [TaxId: 765915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)
E	SCOP2 Family	Adenylyl and guanylyl cyclase catalytic domain	8064533	4001316	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8064534	3001272	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pept_tRNA_hydro	e5oyhA1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
C	Pept_tRNA_hydro	e5oyhC1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
D	Pept_tRNA_hydro	e5oyhD1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
J	Pept_tRNA_hydro	e5oyhJ1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
K	Pept_tRNA_hydro	e5oyhK1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
L	Pept_tRNA_hydro	e5oyhL1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
M	Pept_tRNA_hydro	e5oyhM1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
N	Pept_tRNA_hydro	e5oyhN1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
O	Pept_tRNA_hydro	e5oyhO1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
P	Pept_tRNA_hydro	e5oyhP1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
I	Pept_tRNA_hydro	e5oyhI1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
H	Pept_tRNA_hydro	e5oyhH1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
G	Pept_tRNA_hydro	e5oyhG1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
F	Pept_tRNA_hydro	e5oyhF1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
E	Pept_tRNA_hydro	e5oyhE1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
B	Pept_tRNA_hydro	e5oyhB1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
C	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
D	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
J	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
K	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
L	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
M	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
N	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
O	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
P	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
I	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
H	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
G	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
F	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
E	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)
B	3.30.70.1230	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleotide cyclase, GGDEF domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00211	Adenylate and Guanylate cyclase catalytic domain (Guanylate_cyc)	Adenylate and Guanylate cyclase catalytic domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Nucleotide cyclase	phosphorus-oxygen lyase activity cyclase activity lyase activity adenylate cyclase activity catalytic activity guanylate cyclase activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding phosphorus-oxygen lyase activity cyclase activity lyase activity adenylate cyclase activity catalytic activity guanylate cyclase activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding peptide receptor activity molecular transducer activity signaling receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction intracellular signal transduction cell communication cell surface receptor signaling pathway receptor guanylyl cyclase signaling pathway enzyme-linked receptor protein signaling pathway	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR050401	Cyclic nucleotide synthase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001054	Adenylyl cyclase class-3/4/guanylyl cyclase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR029787	Nucleotide cyclase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.