5OQD

PHD2 and winged-helix domain of Polycomblike

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	F_UNCLASSIFIED	e5oqdB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth B]	F_UNCLASSIFIED	e5oqdB1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e5oqdA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e5oqdA1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e5oqdC2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e5oqdC1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e5oqdD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e5oqdD2	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)
E	F_UNCLASSIFIED	e5oqdE1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
E	F_UNCLASSIFIED	e5oqdE2	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)
F	F_UNCLASSIFIED	e5oqdF2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
F	F_UNCLASSIFIED	e5oqdF1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	PF21198	Set1/Ash2 histone methyltransferase complex subunit ASH2-like, WH (ASH2L-like_WH)	Set1/Ash2 histone methyltransferase complex subunit ASH2-like, WH	This domain is found in Set1/Ash2 histone methyltransferase complex subunit ASH2 from humans (ASH2L, named after 'Absent, small, homeotic disks-2-like') and similar animal proteins. ASH2L is a non-catalytic component of the Set1/Ash2 histone methyltr ...	This domain is found in Set1/Ash2 histone methyltransferase complex subunit ASH2 from humans (ASH2L, named after 'Absent, small, homeotic disks-2-like') and similar animal proteins. ASH2L is a non-catalytic component of the Set1/Ash2 histone methyltransferase (HMT) complex. Aberrant expression and recurrent recurrent mutations in components of this complex have been related to different diseases. This entry represents the winged-helix (WH) domain, which is found N-terminal to the SPRY domain (Pfam:PF00622) in ASH2L. It binds directly to DNA and shows a compact alpha/beta structure consisting of three alpha-helices and a curved three-stranded beta-sheet [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	Polycomb protein Pcl	DNA binding binding organic cyclic compound binding nucleic acid binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein-containing complex binding chromatin binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding DNA binding binding organic cyclic compound binding nucleic acid binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein-containing complex binding chromatin binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding metal ion binding small molecule binding	developmental process multicellular organism development multicellular organismal process anterior/posterior axis specification anterior/posterior pattern specification anatomical structure development pattern specification process regionalization axis specification regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process developmental process multicellular organism development multicellular organismal process anterior/posterior axis specification anterior/posterior pattern specification anatomical structure development pattern specification process regionalization axis specification regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to fungus defense response to other organism response to stress response to external biotic stimulus response to fungus transcription by RNA polymerase II regulation of transcription by RNA polymerase II central nervous system development ventral cord development animal organ development nervous system development system development protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization cellular component organization or biogenesis	intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle polytene chromosome chromosome cellular anatomical entity non-membrane-bounded organelle cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR025894	Polycomb-like MTF2 factor 2, C-terminal domain	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR001965	Zinc finger, PHD-type	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR002999	Tudor domain	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR019787	Zinc finger, PHD-finger	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.