5OJR

YCF48 bound to D1 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GH74 xyloglucanase-like	8052059	3000502	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GH74 xyloglucanase-like	8052059	3000502	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GH74 xyloglucanase-like	8052059	3000502	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GH74 xyloglucanase-like	8052059	3000502	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF14870	e5ojrA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF14870	ECOD (1.6)
B	PF14870	e5ojrB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF14870	ECOD (1.6)
C	PF14870	e5ojrC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF14870	ECOD (1.6)
D	PF14870	e5ojrD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF14870	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF14870	Photosynthesis system II assembly factor YCF48 (PSII_BNR)	Photosynthesis system II assembly factor YCF48	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ycf48-like protein	-	photosynthesis cellular metabolic process metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle membrane-bounded organelle membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular organelle lumen cell periphery cytoplasmic vesicle bacterial thylakoid vesicle vesicle lumen plasma membrane intracellular membrane-bounded organelle organelle lumen cytoplasm plasma membrane-derived thylakoid lumen thylakoid lumen
E, F	Photosystem II protein D1 3	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxygen evolving activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity oxygen evolving activity chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain cellular metabolic process electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy response to stimulus response to chemical response to stress response to herbicide response to toxic substance	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle plasma membrane-derived chromatophore membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle photosynthetic membrane thylakoid non-membrane-bounded organelle plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR016705	Photosynthesis system II assembly factor Ycf48/Hcf136	Family
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR028203	Photosynthesis system II assembly factor Ycf48/Hcf136-like domain	Domain
E, F	IPR005867	Photosystem II protein D1	Family
E, F	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
E, F	IPR000484	Photosynthetic reaction centre, L/M	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.