Annotations: 5OHQ

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOW_KIN17	e5ohqA2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: KOW_KIN17	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23287	Transcription elongation factor SPT5, seventh KOW domain (KOW7_SPT5)	Transcription elongation factor SPT5, seventh KOW domain	This entry includes Transcription elongation factor SPT5, a component of the elongation factor DRB-sensitivity inducing factor (DSIF) that plays multiple roles during transcription [1-4]. SPT5 is a multidomain protein consisting of an N-terminal NusG ...	This entry includes Transcription elongation factor SPT5, a component of the elongation factor DRB-sensitivity inducing factor (DSIF) that plays multiple roles during transcription [1-4]. SPT5 is a multidomain protein consisting of an N-terminal NusG domain (Pfam:PF03439), tandem of KOW domains and and a mobile C-terminal-repeat region. The KOW domains differ in number between yeast, which has five, and animals, which have seven. This entry represents the seventh KOW domain of Spt5 from animals, which is located at the very C-terminal of the sequences [2]. The KOW domains of these proteins play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and they are also involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.	Domain
A	PF23288	Transcription elongation factor SPT5, sixth KOW domain (KOW6_SPT5)	Transcription elongation factor SPT5, sixth KOW domain	This entry includes Transcription elongation factor SPT5, a component of the elongation factor DRB-sensitivity inducing factor (DSIF) that plays multiple roles during transcription [1-4]. SPT5 is a multidomain protein consisting of an N-terminal NusG ...	This entry includes Transcription elongation factor SPT5, a component of the elongation factor DRB-sensitivity inducing factor (DSIF) that plays multiple roles during transcription [1-4]. SPT5 is a multidomain protein consisting of an N-terminal NusG domain (Pfam:PF03439), tandem of KOW domains and and a mobile C-terminal-repeat region. The KOW domains differ in number between yeast, which has five, and animals, which have seven. This entry represents the sixth KOW domain of SPT5 from animals [1]. The KOW domains of these proteins play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors, and they are also involved in the binding of the eukaryotic SPT5 proteins to RNA polymerases [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Transcription elongation factor SPT5	chromatin binding binding protein heterodimerization activity protein binding protein dimerization activity RNA binding nucleic acid binding mRNA binding enzyme binding	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of DNA-templated transcription, elongation positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of DNA-templated transcription, elongation positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression DNA-templated transcription elongation biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of DNA-templated transcription, elongation negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process transcription elongation by RNA polymerase II transcription by RNA polymerase II regulation of transcription elongation by RNA polymerase II positive regulation of autophagy catabolic process macroautophagy autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process regulation of macroautophagy positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of transcription elongation by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II	membrane-bounded organelle protein-containing complex intracellular anatomical structure transcription elongation factor complex DSIF complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle protein-containing complex intracellular anatomical structure transcription elongation factor complex DSIF complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR057934	Spt5, KOW domain repeat 7	Domain
A	IPR041976	Spt5, KOW domain repeat 3	Domain
A	IPR041980	Spt5, KOW domain repeat 6, metazoa	Domain
A	IPR039385	NGN domain, eukaryotic	Domain
A	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A	IPR022581	Spt5 transcription elongation factor, N-terminal	Domain
A	IPR024945	Spt5 C-terminal domain	Domain
A	IPR057936	Spt5, KOWx domain	Domain
A	IPR006645	NusG-like, N-terminal	Domain
A	IPR041975	Spt5, KOW domain repeat 2	Domain
A	IPR039659	Transcription elongation factor SPT5	Family
A	IPR036735	NusG, N-terminal domain superfamily	Homologous Superfamily
A	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
A	IPR041973	Spt5, KOW domain repeat 1	Domain
A	IPR005100	NGN domain	Domain
A	IPR041977	Spt5, KOW domain repeat 4	Domain
A	IPR017071	Transcription elongation factor Spt5, eukaryote	Family
A	IPR005824	KOW	Domain
A	IPR041978	Spt5, KOW domain repeat 5	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O00267	diabetes mellitus ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.