5OHF | pdb_00005ohf

Globin sensor domain of AfGcHK (FeIII form) in complex with cyanide, partially reduced

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8061817	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	RRM_1	e5ohfH1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
G	RRM_1	e5ohfG1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
F	RRM_1	e5ohfF1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
E	RRM_1	e5ohfE1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
D	RRM_1	e5ohfD1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
C	RRM_1	e5ohfC1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
B	RRM_1	e5ohfB1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
A	RRM_1	e5ohfA1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF11563	Protoglobin (Protoglobin)	Protoglobin	This family includes protoglobin from Methanosarcina acetivorans C2A. It is also found near the N-terminus of the Haem-based aerotactic transducer HemAT in Bacillus subtilis (Swiss:O07621). It is part of the haemoglobin superfamily. Protoglobin has s ...	This family includes protoglobin from Methanosarcina acetivorans C2A. It is also found near the N-terminus of the Haem-based aerotactic transducer HemAT in Bacillus subtilis (Swiss:O07621). It is part of the haemoglobin superfamily. Protoglobin has specific loops and an amino-terminal extension which leads to the burying of the haem within the matrix of the protein. Protoglobin-specific apolar tunnels allow the access of O2, CO and NO to the haem distal site [1]. In HemAT it acts as an oxygen sensor domain [2]. It can also recognise cyanide (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Globin-coupled histidine kinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding oxygen binding identical protein binding protein binding protein homodimerization activity protein dimerization activity tetrapyrrole binding heme binding molecular sensor activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, nitrogenous group as acceptor phosphotransferase activity, alcohol group as acceptor protein histidine kinase activity transferase activity, transferring phosphorus-containing groups phosphorelay sensor kinase activity molecular function regulator activity catalytic activity cation binding metal ion binding	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction peptidyl-histidine phosphorylation protein phosphorylation phosphorylation cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction peptidyl-histidine phosphorylation protein phosphorylation phosphorylation primary metabolic process peptidyl-histidine modification macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR039379	Protoglobin, globin sensor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009050	Globin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012292	Globin/Protoglobin	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR044398	Globin-sensor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003594	Histidine kinase/HSP90-like ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005467	Histidine kinase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.