5ODS | pdb_00005ods

Structure of a phosphoprotein-protein complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Clathrin_propel	e5odsD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Clathrin_propel	ECOD (1.6)
D	Clathrin_H_link	e5odsD2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Clathrin_H_link	ECOD (1.6)
C	Clathrin_propel	e5odsC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Clathrin_propel	ECOD (1.6)
C	Clathrin_H_link	e5odsC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Clathrin_H_link	ECOD (1.6)
B	Clathrin_propel	e5odsB2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Clathrin_propel	ECOD (1.6)
B	Clathrin_H_link	e5odsB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Clathrin_H_link	ECOD (1.6)
A	Clathrin_propel	e5odsA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Clathrin_propel	ECOD (1.6)
A	Clathrin_H_link	e5odsA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Clathrin_H_link	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.130.10.110	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)
C	2.130.10.110	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)
B	2.130.10.110	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)
A	2.130.10.110	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09268	Clathrin, heavy-chain linker (Clathrin-link)	Clathrin, heavy-chain linker	-	Repeat
A, B, C, D	PF13838	Clathrin-H-link (Clathrin_H_link)	Clathrin-H-link	-	Repeat
A, B, C, D	PF01394	Clathrin propeller repeat (Clathrin_propel)	Clathrin propeller repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	LYS-GLU-SER-ALA-LEU-ARG-LYS-GLN-SEP-LEU-TYR-LEU-LYS-PHE-ASP-PRO-LEU-LEU	-	regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process microtubule cytoskeleton organization regulation of mitotic spindle organization mitotic cell cycle cellular component organization cell cycle cellular component organization or biogenesis regulation of cell cycle microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process regulation of biological process regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process microtubule cytoskeleton organization regulation of mitotic spindle organization mitotic cell cycle cellular component organization cell cycle cellular component organization or biogenesis regulation of cell cycle microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process regulation of biological process regulation of cell cycle process biological regulation regulation of microtubule-based process regulation of spindle organization regulation of organelle organization mitotic spindle organization organelle organization mitotic cell cycle process cellular process microtubule-based process cytoskeleton organization regulation of microtubule cytoskeleton organization developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development multicellular organism development central nervous system development anatomical structure development telencephalon development system development regulation of chromosome segregation cell cycle phase transition chromosome segregation chromosome organization sister chromatid segregation regulation of chromosome organization regulation of sister chromatid segregation nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition cell division establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane-bounded organelle Golgi apparatus cytoplasm intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane-bounded organelle Golgi apparatus cytoplasm intracellular membrane-bounded organelle endomembrane system centrosome microtubule organizing center centriolar satellite cytosol mitotic spindle cilium plasma membrane bounded cell projection ciliary basal body cell projection
A, B, C, D	Clathrin heavy chain 1	clathrin binding protein binding binding clathrin light chain binding RNA binding double-stranded RNA binding nucleic acid binding kinase binding enzyme binding protein kinase binding structural molecule activity	cellular process cell division catabolic process autophagy metabolic process process utilizing autophagic mechanism cellular component disassembly clathrin coat disassembly transport protein-containing complex organization protein-containing complex disassembly establishment of localization vesicle-mediated transport vesicle uncoating cellular process cell division catabolic process autophagy metabolic process process utilizing autophagic mechanism cellular component disassembly clathrin coat disassembly transport protein-containing complex organization protein-containing complex disassembly establishment of localization vesicle-mediated transport vesicle uncoating cellular component organization localization cellular component organization or biogenesis protein depolymerization cellular localization establishment of protein localization nitrogen compound transport intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation microtubule-based process cytoskeleton organization regulation of cellular process glycosaminoglycan metabolic process negative regulation of biological process regulation of hyaluronan biosynthetic process carbohydrate derivative metabolic process regulation of polysaccharide metabolic process regulation of primary metabolic process negative regulation of hyaluronan biosynthetic process hyaluronan metabolic process polysaccharide metabolic process negative regulation of cellular process glycosaminoglycan biosynthetic process regulation of carbohydrate metabolic process negative regulation of carbohydrate metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process regulation of biological process polysaccharide biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process biological regulation primary metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process hyaluronan biosynthetic process biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of polysaccharide biosynthetic process aminoglycan metabolic process aminoglycan biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of carbohydrate biosynthetic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit clathrin coat of coated pit myelin sheath presynaptic endocytic zone synapse presynaptic membrane synaptic membrane presynapse presynaptic endocytic zone membrane cell junction plasma membrane region pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle postsynaptic endocytic zone postsynapse glutamatergic synapse nucleus nuclear protein-containing complex Myb complex clathrin complex photoreceptor ribbon synapse ribbon synapse cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton vesicle coat transport vesicle membrane clathrin coat of trans-Golgi network vesicle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR039915	TACC family	Family
E, F, G, H	IPR007707	Transforming acidic coiled-coil-containing protein, C-terminal	Domain
A, B, C, D	IPR016341	Clathrin, heavy chain	Family
A, B, C, D	IPR015348	Clathrin, heavy chain, linker, core motif	Domain
A, B, C, D	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B, C, D	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D	IPR016025	Clathrin heavy chain, N-terminal	Homologous Superfamily
A, B, C, D	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	Repeat
A, B, C, D	IPR022365	Clathrin, heavy chain, propeller repeat	Repeat
A, B, C, D	IPR055358	Clathrin heavy-chain repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	Pharos: Q9Y6A5	transitional cell carcinoma gliosarcoma giant cell glioblastoma urinary bladder cancer ovarian cancer primitive neuroectodermal tumor adrenal cortex carcinoma breast cancer glioblastoma interstitial cystitis lung cancer malignant mesothelioma osteoarthritis pancreatic intraductal papillary-mucinous carcinoma psoriasis transitional cell carcinoma gliosarcoma giant cell glioblastoma urinary bladder cancer ovarian cancer primitive neuroectodermal tumor adrenal cortex carcinoma breast cancer glioblastoma interstitial cystitis lung cancer malignant mesothelioma osteoarthritis pancreatic intraductal papillary-mucinous carcinoma psoriasis urinary bladder neoplasm atopic eczema endometriosis invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor hepatocellular carcinoma large cell medulloblastoma malignant glioma non-small cell lung carcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E, F, G, H	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.