Annotations: 5OCR

Crystal structure of the kappa-carrageenase zobellia_236 from Zobellia galactanivorans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5ocra_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Glycosyl hydrolases family 16	kappa-Carrageenase, catalytic	(Zobellia galactanivorans ) [TaxId: 63186 ],	SCOPe (2.08)
B	d5ocrb_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Glycosyl hydrolases family 16	kappa-Carrageenase, catalytic	(Zobellia galactanivorans ) [TaxId: 63186 ],	SCOPe (2.08)
C	d5ocrc_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Glycosyl hydrolases family 16	kappa-Carrageenase, catalytic	(Zobellia galactanivorans ) [TaxId: 63186 ],	SCOPe (2.08)
D	d5ocrd_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Glycosyl hydrolases family 16	kappa-Carrageenase, catalytic	(Zobellia galactanivorans ) [TaxId: 63186 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Glycosyl hydrolases family 16	8081141	4002662	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8081142	3000120	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8081142	3000120	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8081142	3000120	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8081142	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C1-set	e5ocrA1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: C1-set	ECOD (v294.2)
B	C1-set	e5ocrB1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: C1-set	ECOD (v294.2)
C	C1-set	e5ocrC1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: C1-set	ECOD (v294.2)
D	C1-set	e5ocrD1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: C1-set	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00722	Glycosyl hydrolases family 16 (Glyco_hydro_16)	Glycosyl hydrolases family 16		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Kappa-carrageenase	hydrolase activity, acting on glycosyl bonds kappa-carrageenase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D	IPR000757	Beta-glucanase-like, N-terminal domain	Domain
A, B, C, D	IPR050546	Glycosyl Hydrolase Family 16	Family
A, B, C, D	IPR026444	Secretion system, C-terminal sorting domain	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.