5NZS
The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
G [auth R] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00400 | e5nzsA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
A | PF04053 | e5nzsA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF04053 | ECOD (1.6) |
A | PF04053 | e5nzsA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04053 | ECOD (1.6) |
B | PF07718 | e5nzsB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07718 | ECOD (1.6) |
B | PF01602 | e5nzsB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
B | PF14806 | e5nzsB1 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF14806 | ECOD (1.6) |
E [auth F] | PF00025 | e5nzsF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
G [auth R] | PF00025 | e5nzsR1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
K [auth M] | PF00025 | e5nzsM1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
F [auth G] | PF08752 | e5nzsG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08752 | ECOD (1.6) |
F [auth G] | PF01602 | e5nzsG2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
F [auth G] | PF16381 | e5nzsG3 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF16381 | ECOD (1.6) |
I [auth K] | PF08752 | e5nzsK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08752 | ECOD (1.6) |
I [auth K] | PF01602 | e5nzsK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
I [auth K] | PF16381 | e5nzsK3 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF16381 | ECOD (1.6) |
H [auth Z] | PF01217 | e5nzsZ1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
J [auth L] | PF01217 | e5nzsL1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
L [auth P] | PF01412 | e5nzsP1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01412 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat | |
PF14806 | Coatomer beta subunit appendage platform (Coatomer_b_Cpla) | Coatomer beta subunit appendage platform | This family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. | Domain | |
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain | |
E [auth F], G [auth R], K [auth M] | PF00025 | ADP-ribosylation factor family (Arf) | ADP-ribosylation factor family | Pfam combines a number of different Prosite families together | Domain |
F [auth G], I [auth K] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
F [auth G], I [auth K] | PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla) | Coatomer subunit gamma-1 C-terminal appendage platform | Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ... | Domain |
F [auth G], I [auth K] | PF08752 | Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf) | Coatomer gamma subunit appendage platform subdomain | COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ... | Domain |
H [auth Z], J [auth L] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
L [auth P] | PF01412 | Putative GTPase activating protein for Arf (ArfGap) | Putative GTPase activating protein for Arf | Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. | Domain |