5NW4 | pdb_00005nw4

Human cytoplasmic dynein-1 bound to dynactin and an N-terminal construct of BICD2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V [auth Z]	SCOP2B Superfamily	Subunits of heterodimeric actin filament capping protein Capz	8077550	3001499	SCOP2B (2022-06-29)
U [auth Y]	SCOP2B Superfamily	Subunits of heterodimeric actin filament capping protein Capz	8077311	3001499	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
DA [auth h]	Rogdi_lz	e5nw4h1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
CA [auth g]	Rogdi_lz	e5nw4g1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
V [auth Z]	Rogdi_lz	e5nw4Z1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
U [auth Y]	Rogdi_lz	e5nw4Y1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
T [auth X]	Rogdi_lz	e5nw4X1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
R [auth V]	Rogdi_lz	e5nw4V1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
S [auth W]	Rogdi_lz	e5nw4W1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
Q [auth U]	Rogdi_lz	e5nw4U1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
P [auth T]	Rogdi_lz	e5nw4T1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
O [auth Q]	Rogdi_lz	e5nw4Q1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
N [auth P]	Rogdi_lz	e5nw4P1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
M [auth O]	Rogdi_lz	e5nw4O1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
L [auth H]	Rogdi_lz	e5nw4H1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
K [auth G]	Rogdi_lz	e5nw4G1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
U [auth Y]	PF01267	F-actin capping protein alpha subunit (F-actin_cap_A)	F-actin capping protein alpha subunit	-	Family
K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], P [auth T], Q [auth U], S [auth W]	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth F]	dynein light intermediate chain	-	-	-
I [auth E]	dynein light intermediate chain	-	-	-
G [auth R], H [auth S]	Robl	-	-	-
F [auth 2]	dynein N-terminal dimerization domain	-	-	-
E [auth 1]	dynein N-terminal dimerization domain	-	-	-
D [auth A]	dynein heavy chain	-	-	-
C	dynein intermediate chain	-	-	-
LA [auth 5], MA [auth 6]	BICD2N	-	-	-
KA [auth o]	dynactin p150	-	-	-
JA [auth n]	Dynactin	-	microtubule-based process cellular process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cytoplasm catalytic complex protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cytoplasm catalytic complex dynein complex
IA [auth m]	Dynactin	-	-	-
HA [auth l]	Dynactin	-	microtubule-based process cellular process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cytoplasm catalytic complex protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cytoplasm catalytic complex dynein complex
GA [auth k]	Dynactin	-	microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton membrane cytoplasm protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton membrane cytoplasm catalytic complex dynein complex centrosome microtubule organizing center polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
FA [auth j]	p150	-	-	-
EA [auth i]	dynactin pointed end p62	-	-	-
DA [auth h]	Dynactin subunit 5	-	developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development coronary vasculature development vasculature development developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development coronary vasculature development vasculature development blood vessel development artery development aorta development	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system organelle envelope nuclear envelope organelle membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen centrosome microtubule organizing center
B [auth D]	dynein intermediate chain	-	-	-
CA [auth g]	Dynactin 6	protein-containing complex binding binding dynein complex binding	microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome centrosome microtubule organizing center
AA [auth e], BA [auth f]	dynactin shoulder complex	-	-	-
Y [auth c], Z [auth d]	dynactin shoulder complex	-	-	-
X [auth b]	dynactin shoulder complex	-	-	-
W [auth a]	dynactin shoulder complex	-	-	-
V [auth Z]	F-actin capping protein beta subunit variant II	cytoskeletal protein binding actin binding protein binding binding	regulation of cellular process regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization cellular component biogenesis actin filament capping cellular component assembly actin filament-based process regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization regulation of cellular process regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization cellular component biogenesis actin filament capping cellular component assembly actin filament-based process regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization cellular component disassembly regulation of biological process barbed-end actin filament capping negative regulation of cellular component organization actin filament organization regulation of organelle organization negative regulation of protein depolymerization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process cellular component organization regulation of protein-containing complex assembly negative regulation of protein-containing complex disassembly negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization cellular component organization or biogenesis regulation of actin filament polymerization actin polymerization or depolymerization protein polymerization regulation of actin filament organization actin cytoskeleton organization actin filament polymerization protein-containing complex organization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization biological regulation regulation of cellular component biogenesis organelle organization negative regulation of organelle organization regulation of actin filament length regulation of actin cytoskeleton organization cellular process negative regulation of actin filament depolymerization protein depolymerization cytoskeleton organization regulation of anatomical structure size	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle protein-containing complex cytoskeleton organelle membraneless organelle F-actin capping protein complex intracellular membraneless organelle actin cytoskeleton
U [auth Y]	Capping protein (Actin filament) muscle Z-line, alpha 1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	regulation of cellular process regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization cellular component biogenesis actin filament capping cellular component assembly actin filament-based process regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization regulation of cellular process regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization cellular component biogenesis actin filament capping cellular component assembly actin filament-based process regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization cellular component disassembly regulation of biological process barbed-end actin filament capping negative regulation of cellular component organization actin filament organization regulation of organelle organization negative regulation of protein depolymerization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process cellular component organization regulation of protein-containing complex assembly negative regulation of protein-containing complex disassembly negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization cellular component organization or biogenesis regulation of actin filament polymerization actin polymerization or depolymerization protein polymerization regulation of actin filament organization actin cytoskeleton organization actin filament polymerization protein-containing complex organization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization biological regulation regulation of cellular component biogenesis organelle organization negative regulation of organelle organization regulation of actin filament length regulation of actin cytoskeleton organization cellular process negative regulation of actin filament depolymerization protein depolymerization cytoskeleton organization regulation of anatomical structure size	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle protein-containing complex cytoskeleton organelle membraneless organelle F-actin capping protein complex intracellular membraneless organelle actin cytoskeleton cell cortex cortical cytoskeleton cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle protein-containing complex cytoskeleton organelle membraneless organelle F-actin capping protein complex intracellular membraneless organelle actin cytoskeleton cell cortex cortical cytoskeleton cell periphery
T [auth X]	Arp11	-	establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion establishment of mitochondrion localization retrograde axonal transport intracellular transport establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion establishment of mitochondrion localization retrograde axonal transport intracellular transport axonal transport establishment of localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport microtubule-based transport cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process retrograde axonal transport of mitochondrion	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton neuron projection cytoplasm axon protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton neuron projection cytoplasm axon cell projection axon cytoplasm neuron projection cytoplasm plasma membrane bounded cell projection
R [auth V]	beta-actin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle
K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], P [auth T], Q [auth U], S [auth W]	Arp1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cell periphery cell cortex protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cell periphery cell cortex cytoplasm centrosome microtubule organizing center
A [auth B]	dynein heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
JA [auth n]	IPR028133	Dynamitin	Family
HA [auth l]	IPR028133	Dynamitin	Family
GA [auth k]	IPR028133	Dynamitin	Family
DA [auth h]	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
DA [auth h]	IPR047125	Dynactin subunit 5	Family
CA [auth g]	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
CA [auth g]	IPR027777	Dynactin subunit 6	Family
V [auth Z]	IPR037282	F-actin-capping protein subunit alpha/beta	Homologous Superfamily
V [auth Z]	IPR019771	F-actin capping protein, beta subunit, conserved site	Conserved Site
V [auth Z]	IPR001698	F-actin-capping protein subunit beta	Family
V [auth Z]	IPR043175	F-actin-capping protein subunit beta, N-terminal domain	Homologous Superfamily
V [auth Z]	IPR042276	F-actin-capping protein subunit alpha/beta, domain 2	Homologous Superfamily
U [auth Y]	IPR002189	F-actin-capping protein subunit alpha	Family
U [auth Y]	IPR042489	F-actin capping protein, alpha subunit, domain 1	Homologous Superfamily
U [auth Y]	IPR037282	F-actin-capping protein subunit alpha/beta	Homologous Superfamily
U [auth Y]	IPR017865	F-actin capping protein, alpha subunit, conserved site	Conserved Site
U [auth Y]	IPR042276	F-actin-capping protein subunit alpha/beta, domain 2	Homologous Superfamily
T [auth X]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
T [auth X]	IPR004000	Actin family	Family
R [auth V]	IPR020902	Actin/actin-like conserved site	Conserved Site
R [auth V]	IPR004001	Actin, conserved site	Conserved Site
R [auth V]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
R [auth V]	IPR004000	Actin family	Family
K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], P [auth T], Q [auth U], S [auth W]	IPR020902	Actin/actin-like conserved site	Conserved Site
K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], P [auth T], Q [auth U], S [auth W]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], K [auth G], L [auth H], M [auth O], N [auth P], O [auth Q], P [auth T], Q [auth U], S [auth W]	IPR004000	Actin family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
DA [auth h]	Pharos: Q9BTE1	atypical teratoid rhabdoid tumor cutaneous lupus erythematosus lung cancer medulloblastoma psoriasis bipolar disorder glioblastoma malignant ependymoma non-small cell lung carcinoma breast cancer large cell medulloblastoma malignant glioma osteosarcoma