5NW4 | pdb_00005nw4

Human cytoplasmic dynein-1 bound to dynactin and an N-terminal construct of BICD2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
V [auth Z]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077550 3001499 SCOP2B (2022-06-29)
U [auth Y]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DA [auth h]Hexapep_2_1e5nw4h1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
CA [auth g]Hexapep_2_1e5nw4g1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
V [auth Z]F_actin_cap_B_1ste5nw4Z2 A: alpha bundlesX: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)T: alpha-helical domain in subunits of heterodimeric actin filament capping protein CapzF: F_actin_cap_B_1stECOD (1.6)
V [auth Z]F_actin_cap_B_3rde5nw4Z3 A: a+b two layersX: a+b domain in Capz (From Topology)H: a+b domain in Capz (From Topology)T: a+b domain in CapzF: F_actin_cap_B_3rdECOD (1.6)
V [auth Z]F_actin_cap_B_2nde5nw4Z1 A: few secondary structure elementsX: beta-barrel domain in Capz (From Topology)H: beta-barrel domain in Capz (From Topology)T: beta-barrel domain in CapzF: F_actin_cap_B_2ndECOD (1.6)
U [auth Y]F-actin_cap_A_1ste5nw4Y1 A: alpha bundlesX: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology)T: alpha-helical domain in subunits of heterodimeric actin filament capping protein CapzF: F-actin_cap_A_1stECOD (1.6)
U [auth Y]F-actin_cap_A_3rde5nw4Y3 A: a+b two layersX: a+b domain in Capz (From Topology)H: a+b domain in Capz (From Topology)T: a+b domain in CapzF: F-actin_cap_A_3rdECOD (1.6)
U [auth Y]F-actin_cap_A_2nde5nw4Y2 A: few secondary structure elementsX: beta-barrel domain in Capz (From Topology)H: beta-barrel domain in Capz (From Topology)T: beta-barrel domain in CapzF: F-actin_cap_A_2ndECOD (1.6)
T [auth X]Actin_1ste5nw4X1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
T [auth X]Actin_2nde5nw4X2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
R [auth V]Actin_1ste5nw4V2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
R [auth V]Actin_2nde5nw4V1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
S [auth W]Actin_1ste5nw4W2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
S [auth W]Actin_2nde5nw4W1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
Q [auth U]Actin_1ste5nw4U2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
Q [auth U]Actin_2nde5nw4U1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
P [auth T]Actin_1ste5nw4T1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
P [auth T]Actin_2nde5nw4T2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
O [auth Q]Actin_1ste5nw4Q1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
O [auth Q]Actin_2nde5nw4Q2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
N [auth P]Actin_1ste5nw4P2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
N [auth P]Actin_2nde5nw4P1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
M [auth O]Actin_1ste5nw4O1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
M [auth O]Actin_2nde5nw4O2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
L [auth H]Actin_1ste5nw4H2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
L [auth H]Actin_2nde5nw4H1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
K [auth G]Actin_1ste5nw4G2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
K [auth G]Actin_2nde5nw4G1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth F]dynein light intermediate chain---
I [auth E]dynein light intermediate chain---
G [auth R],
H [auth S]
Robl---
F [auth 2]dynein N-terminal dimerization domain---
E [auth 1]dynein N-terminal dimerization domain---
D [auth A]dynein heavy chain---
dynein intermediate chain---
LA [auth 5],
MA [auth 6]
BICD2N---
KA [auth o]dynactin p150---
JA [auth n]Dynactin-
IA [auth m]Dynactin- - -
HA [auth l]Dynactin-
GA [auth k]Dynactin-
FA [auth j]p150---
EA [auth i]dynactin pointed end p62---
DA [auth h]Dynactin subunit 5-
B [auth D]dynein intermediate chain---
CA [auth g]Dynactin 6
AA [auth e],
BA [auth f]
dynactin shoulder complex---
Y [auth c],
Z [auth d]
dynactin shoulder complex---
X [auth b]dynactin shoulder complex---
W [auth a]dynactin shoulder complex---
V [auth Z]F-actin capping protein beta subunit variant II
U [auth Y]Capping protein (Actin filament) muscle Z-line, alpha 1
T [auth X]Arp11-
R [auth V]beta-actin -
Arp1 -
A [auth B]dynein heavy chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
JA [auth n]IPR028133DynamitinFamily
HA [auth l]IPR028133DynamitinFamily
GA [auth k]IPR028133DynamitinFamily
DA [auth h]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
DA [auth h]IPR047125Dynactin subunit 5Family
CA [auth g]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
CA [auth g]IPR027777Dynactin subunit 6Family
V [auth Z]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
V [auth Z]IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
V [auth Z]IPR001698F-actin-capping protein subunit betaFamily
V [auth Z]IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
V [auth Z]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
U [auth Y]IPR002189F-actin-capping protein subunit alphaFamily
U [auth Y]IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
U [auth Y]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
U [auth Y]IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
U [auth Y]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
T [auth X]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
T [auth X]IPR004000Actin familyFamily
R [auth V]IPR020902Actin/actin-like conserved siteConserved Site
R [auth V]IPR004001Actin, conserved siteConserved Site
R [auth V]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
R [auth V]IPR004000Actin familyFamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily