5NNP | pdb_00005nnp

Structure of Naa15/Naa10 bound to HypK-THB

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Acyl-CoA N-acyltransferases (Nat)	8097798	3000403	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Acyl-CoA N-acyltransferases (Nat)	8097798	3000403	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPR_11_6	e5nnpA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_6	ECOD (1.6)
D [auth E]	TPR_15	e5nnpE1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_15	ECOD (1.6)
B	Acetyltransf_10_5	e5nnpB1	A: a+b three layers	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat) (From Topology)	T: Acyl-CoA N-acyltransferases (Nat)	F: Acetyltransf_10_5	ECOD (1.6)
E [auth F]	Acetyltransf_10_5	e5nnpF1	A: a+b three layers	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat) (From Topology)	T: Acyl-CoA N-acyltransferases (Nat)	F: Acetyltransf_10_5	ECOD (1.6)
C	UNK_F_TYPE	e5nnpC1	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: UNK_F_TYPE	ECOD (1.6)
F [auth G]	UNK_F_TYPE	e5nnpG1	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
D [auth E]	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)
E [auth F]	3.40.630.30	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Gcn5-related N-acetyltransferase (GNAT)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth E]	PF13432	Tetratricopeptide repeat (TPR_16)	Tetratricopeptide repeat	-	Repeat
A, D [auth E]	PF12569	N-terminal acetyltransferase A, auxiliary subunit (NatA_aux_su)	N-terminal acetyltransferase A, auxiliary subunit	-	Repeat
B, E [auth F]	PF00583	Acetyltransferase (GNAT) family (Acetyltransf_1)	Acetyltransferase (GNAT) family	-	Family
C, F [auth G]	PF19026	HYPK UBA domain (UBA_HYPK)	HYPK UBA domain	This entry represents the UBA domain [1] found at the C-terminus of the HYPK protein and its homologues. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth E]	N-terminal acetyltransferase-like protein	transferase activity catalytic activity	-	protein-containing complex intracellular anatomical structure NatA complex catalytic complex N-terminal protein acetyltransferase complex transferase complex acetyltransferase complex cellular anatomical structure protein acetyltransferase complex cytoplasm intracellular protein-containing complex
B, E [auth F]	Putative uncharacterized protein	protein N-acetyltransferase activity catalytic activity, acting on a protein acyltransferase activity N-acetyltransferase activity transferase activity protein N-acyltransferase activity protein-N-terminal amino-acid acetyltransferase activity acetyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity N-acyltransferase activity protein N-terminal-serine acetyltransferase activity protein-N-terminal-glutamate acetyltransferase activity	-	protein-containing complex intracellular anatomical structure NatA complex catalytic complex N-terminal protein acetyltransferase complex transferase complex acetyltransferase complex cellular anatomical structure protein acetyltransferase complex cytoplasm intracellular protein-containing complex
G [auth I], H [auth L]	Ser-Glu-Ser-Ser	-	-	-
C, F [auth G]	Putative uncharacterized protein	-	regulation of protein stability biological regulation regulation of biological quality protein stabilization regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process regulation of protein stability biological regulation regulation of biological quality protein stabilization regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth E]	IPR021183	N-terminal acetyltransferase A, auxiliary subunit	Family
A, D [auth E]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, D [auth E]	IPR019734	Tetratricopeptide repeat	Repeat
B, E [auth F]	IPR045047	N-acetyltransferase Ard1-like	Family
B, E [auth F]	IPR016181	Acyl-CoA N-acyltransferase	Homologous Superfamily
B, E [auth F]	IPR000182	GNAT domain	Domain
C, F [auth G]	IPR044034	Nascent polypeptide-associated complex subunit alpha-like, UBA domain	Domain
C, F [auth G]	IPR038922	Huntingtin-interacting protein K, UBA-like domain	Domain
C, F [auth G]	IPR052617	Huntingtin-interacting protein K	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, E [auth F]	FME	Parent Component: MET RESID: AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.