Crystal structure of Burkholderia AP3 phage endolysin
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth G] | PG_binding_1 | e5nm7G1 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain | H: Phosphofructokinase C-terminal domain | T: Lysozyme-like | F: PG_binding_1 | ECOD (v294.1) |
| A [auth G] | Muramidase | e5nm7G2 | A: a/b three-layered sandwiches | X: Phosphofructokinase C-terminal domain | H: Phosphofructokinase C-terminal domain | T: Lysozyme-like | F: Muramidase | ECOD (v294.1) |
| B [auth A] | EarP | e5nm7A1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like | T: Peptidyl-tRNA hydrolase-like | F: EarP | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth G] | 1.10.101.10 | Mainly Alpha | Orthogonal Bundle | Muramoyl-pentapeptide Carboxypeptidase | domain 1 | CATH (utative) |
| B [auth A] | 1.10.101.10 | Mainly Alpha | Orthogonal Bundle | Muramoyl-pentapeptide Carboxypeptidase | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth G], B [auth A] | PF11860 | N-acetylmuramidase (Muramidase) | N-acetylmuramidase | - | Family |
| A [auth G], B [auth A] | PF01471 | Putative peptidoglycan binding domain (PG_binding_1) | Putative peptidoglycan binding domain | This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ... | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth G], B [auth A] | IPR002477 | Peptidoglycan binding-like | Domain |
| A [auth G], B [auth A] | IPR036365 | PGBD-like superfamily | Homologous Superfamily |
| A [auth G], B [auth A] | IPR036366 | PGBD superfamily | Homologous Superfamily |
| A [auth G], B [auth A] | IPR024408 | N-acetylmuramidase | Domain |














