5NM7 | pdb_00005nm7

Crystal structure of Burkholderia AP3 phage endolysin


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth G]PG_binding_1e5nm7G1 A: a/b three-layered sandwichesX: Phosphofructokinase C-terminal domainH: Phosphofructokinase C-terminal domainT: Lysozyme-likeF: PG_binding_1ECOD (v294.1)
A [auth G]Muramidasee5nm7G2 A: a/b three-layered sandwichesX: Phosphofructokinase C-terminal domainH: Phosphofructokinase C-terminal domainT: Lysozyme-likeF: MuramidaseECOD (v294.1)
B [auth A]EarPe5nm7A1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: EarPECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth G]1.10.101.10 Mainly Alpha Orthogonal Bundle Muramoyl-pentapeptide Carboxypeptidase domain 1CATH (utative)
B [auth A]1.10.101.10 Mainly Alpha Orthogonal Bundle Muramoyl-pentapeptide Carboxypeptidase domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth G],
B [auth A]
PF11860N-acetylmuramidase (Muramidase)N-acetylmuramidase- Family
A [auth G],
B [auth A]
PF01471Putative peptidoglycan binding domain (PG_binding_1)Putative peptidoglycan binding domainThis domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ...This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4].
Domain