5NGO | pdb_00005ngo

Crystal structure of the PARP domain of Arabidopsis RADICAL-INDUCED CELL DEATH1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PARP	e5ngoA1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
C [auth E]	PARP	e5ngoE1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
D [auth G]	PARP	e5ngoG1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
E [auth D]	PARP	e5ngoD1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
H [auth C]	PARP	e5ngoC1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
G [auth H]	PARP	e5ngoH1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
F	PARP	e5ngoF1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)
B	PARP	e5ngoB1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: PARP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	PF00644	Poly(ADP-ribose) polymerase catalytic domain (PARP)	Poly(ADP-ribose) polymerase catalytic domain	Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...	Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	Inactive poly [ADP-ribose] polymerase RCD1	pentosyltransferase activity NAD+ poly-ADP-ribosyltransferase activity glycosyltransferase activity transferase activity catalytic activity	response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation developmental process multicellular organismal process reproductive system development reproductive process embryo development developmental process involved in reproduction response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation developmental process multicellular organismal process reproductive system development reproductive process embryo development developmental process involved in reproduction multicellular organism development fruit development embryo development ending in seed dormancy seed development anatomical structure development reproductive structure development post-embryonic development system development cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process signaling cellular response to ethylene stimulus response to endogenous stimulus biological regulation hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus cellular response to chemical stimulus ethylene-activated signaling pathway response to hormone cellular process response to ethylene signal transduction cellular response to hormone stimulus response to lipid cellular response to jasmonic acid stimulus response to jasmonic acid response to fatty acid jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to lipid plant organ development root morphogenesis post-embryonic root morphogenesis post-embryonic plant organ morphogenesis post-embryonic plant morphogenesis plant organ morphogenesis post-embryonic root development anatomical structure morphogenesis lateral root morphogenesis lateral root development post-embryonic plant organ development root development root system development response to oxidative stress response to ozone response to reactive oxygen species cell death programmed cell death reactive oxygen species metabolic process metabolic process regulation of metabolic process regulation of reactive oxygen species metabolic process response to superoxide response to oxygen radical defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism defense response response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus response to osmotic stress response to salt stress nitric oxide metabolic process nitric oxide biosynthetic process biosynthetic process reactive nitrogen species metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	IPR022003	RST domain	Domain
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	IPR004170	WWE domain	Domain
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	Domain
A, B, C [auth E], D [auth G], E [auth D], A, B, C [auth E], D [auth G], E [auth D], F, G [auth H], H [auth C]	IPR044964	Inactive poly [ADP-ribose] polymerase RCD1/SRO1-5	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.