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 5NDE | pdb_00005nde

Crystal structure of metallo-beta-lactamase SPM-1 in space group P4222

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5ndeb_ Alpha and beta proteins (a+b) Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase automated matches automated matches (Pseudomonas aeruginosa ) [TaxId: 287 ], SCOPe (2.08)
Ad5ndea_ Alpha and beta proteins (a+b) Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase automated matches automated matches (Pseudomonas aeruginosa ) [TaxId: 287 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyMetallo-hydrolase/oxidoreductase 8086659 3001057 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMetallo-hydrolase/oxidoreductase 8086659 3001057 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BBromodomaine5ndeB1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: BromodomainECOD (v295.2)
AUQ_cone5ndeA1 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: UQ_conECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (4.3.0)
A3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (4.3.0)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
A, B
ARO:3003793SPM-1Plasmid-mediated SPM metallo-beta-lactamase conferring resistance to carbapenem. Originally isolated from Pseudomonas aeruginosa. Responsible for carbapenem-resistant Pseudomonas aeruginosa (CRPA) outbreaks in Brazil.CARD (4.0.2)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
A, B
ARO:3000580SPM beta-lactamasecarbapenemantibiotic inactivationCARD (4.0.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Beta-lactamase IMP-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001018Beta-lactamase, class-B, conserved siteConserved Site
A, B
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeHomologous Superfamily
A, B
IPR058199Metallo-beta-lactamase type 2/VIM/IMP-1Family
A, B
IPR001279Metallo-beta-lactamaseDomain
A, B
IPR050855Metallo-beta-lactamase type 2-likeFamily