5NCO | pdb_00005nco

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth G]Sulfatase,SGSH_Ce5ncoG1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
H [auth F]Sulfatase,SGSH_Ce5ncoF1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
G [auth E]Sulfatase,SGSH_Ce5ncoE1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
F [auth D]Sulfatase,SGSH_Ce5ncoD1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
E [auth C]Sulfatase,SGSH_Ce5ncoC1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
NA [auth l]Sulfatase,SGSH_Ce5ncol1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
LA [auth j]Sulfatase,SGSH_Ce5ncoj1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
KA [auth i]Sulfatase,SGSH_Ce5ncoi1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
JA [auth h]Sulfatase,SGSH_Ce5ncoh1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
IA [auth g]Sulfatase,SGSH_Ce5ncog1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
HA [auth f]Sulfatase,SGSH_Ce5ncof1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
GA [auth e]Sulfatase,SGSH_Ce5ncoe1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
FA [auth d]Sulfatase,SGSH_Ce5ncod1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
EA [auth c]Sulfatase,SGSH_Ce5ncoc1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
DA [auth b]Sulfatase,SGSH_Ce5ncob1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
CA [auth a]Sulfatase,SGSH_Ce5ncoa1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
BA [auth Z]Sulfatase,SGSH_Ce5ncoZ1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
AA [auth Y]Sulfatase,SGSH_Ce5ncoY1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
Z [auth X]Sulfatase,SGSH_Ce5ncoX1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
Y [auth W]Sulfatase,SGSH_Ce5ncoW1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
X [auth V]Sulfatase,SGSH_Ce5ncoV1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
W [auth U]Sulfatase,SGSH_Ce5ncoU1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
V [auth T]Sulfatase,SGSH_Ce5ncoT1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
U [auth S]Sulfatase,SGSH_Ce5ncoS1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
T [auth R]Sulfatase,SGSH_Ce5ncoR1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
S [auth Q]Sulfatase,SGSH_Ce5ncoQ1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
R [auth P]Sulfatase,SGSH_Ce5ncoP1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
Q [auth O]Sulfatase,SGSH_Ce5ncoO1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
P [auth N]Sulfatase,SGSH_Ce5ncoN1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
O [auth M]Sulfatase,SGSH_Ce5ncoM1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
N [auth L]Sulfatase,SGSH_Ce5ncoL1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
M [auth K]Sulfatase,SGSH_Ce5ncoK1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
L [auth J]Sulfatase,SGSH_Ce5ncoJ1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
K [auth I]Sulfatase,SGSH_Ce5ncoI1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)
J [auth H]Sulfatase,SGSH_Ce5ncoH1 A: alpha arraysX: HTHH: HAMP domainT: HAMP domainF: Sulfatase,SGSH_CECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth G]50S ribosomal protein L6
H [auth F]50S ribosomal protein L5
G [auth E]50S ribosomal protein L4
F [auth D]50S ribosomal protein L3
E [auth C]50S ribosomal protein L2
NA [auth l]Signal recognition particle receptor FtsY
D [auth B]5S rRNA---
MA [auth k]Signal sequence (1A9L)---
LA [auth j]Protein-export membrane protein SecG
KA [auth i]Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
JA [auth h]Protein translocase subunit SecE
IA [auth g]Protein translocase subunit SecY
HA [auth f]50S ribosomal protein L36
GA [auth e]50S ribosomal protein L35
FA [auth d]50S ribosomal protein L34
EA [auth c]50S ribosomal protein L33
DA [auth b]50S ribosomal protein L32
C [auth A]23S rRNA---
CA [auth a]50S ribosomal protein L30
BA [auth Z]50S ribosomal protein L29
AA [auth Y]50S ribosomal protein L28
Z [auth X]50S ribosomal protein L27
Y [auth W]50S ribosomal protein L25
X [auth V]50S ribosomal protein L24
W [auth U]50S ribosomal protein L23
V [auth T]50S ribosomal protein L22
U [auth S]50S ribosomal protein L21
T [auth R]50S ribosomal protein L20
B [auth 2]P-site tRNA-CCA end---
S [auth Q]50S ribosomal protein L19
R [auth P]50S ribosomal protein L18
Q [auth O]50S ribosomal protein L17
P [auth N]50S ribosomal protein L16
O [auth M]50S ribosomal protein L15
N [auth L]50S ribosomal protein L14
M [auth K]50S ribosomal protein L13
L [auth J]50S ribosomal protein L11
K [auth I]50S ribosomal protein L10
J [auth H]50S ribosomal protein L9
A [auth 1]4.5S SRP RNA (Ffs)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
I [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
I [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
I [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
H [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
H [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
H [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
H [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
H [auth F]IPR002132Large ribosomal subunit protein uL5Family
H [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
G [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
G [auth E]IPR002136Large ribosomal subunit protein uL4Family
G [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
F [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth D]IPR000597Large ribosomal subunit protein uL3Family
E [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
E [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth C]IPR002171Large ribosomal subunit protein uL2Family
NA [auth l]IPR004390Signal-recognition particle receptor FtsYFamily
NA [auth l]IPR000897Signal recognition particle, SRP54 subunit, GTPase domainDomain
NA [auth l]IPR036225SRP/SRP receptor, N-terminalHomologous Superfamily
NA [auth l]IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyHomologous Superfamily
NA [auth l]IPR003593AAA+ ATPase domainDomain
NA [auth l]IPR013822Signal recognition particle SRP54, helical bundleDomain
NA [auth l]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth j]IPR004692Preprotein translocase SecG subunitFamily
KA [auth i]IPR000897Signal recognition particle, SRP54 subunit, GTPase domainDomain
KA [auth i]IPR022941Signal recognition particle, SRP54 subunitFamily
KA [auth i]IPR004125Signal recognition particle, SRP54 subunit, M-domainDomain
KA [auth i]IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyHomologous Superfamily
KA [auth i]IPR003593AAA+ ATPase domainDomain
KA [auth i]IPR004780Signal recognition particle proteinFamily
KA [auth i]IPR013822Signal recognition particle SRP54, helical bundleDomain
KA [auth i]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KA [auth i]IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyHomologous Superfamily
JA [auth h]IPR005807SecE subunit of protein translocation complex, bacterial-likeFamily
JA [auth h]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
JA [auth h]IPR038379SecE superfamilyHomologous Superfamily
IA [auth g]IPR002208SecY/SEC61-alpha familyFamily
IA [auth g]IPR030659SecY conserved siteConserved Site
IA [auth g]IPR023201SecY domain superfamilyHomologous Superfamily
IA [auth g]IPR026593Protein translocase subunit SecYFamily
HA [auth f]IPR000473Large ribosomal subunit protein bL36Family
HA [auth f]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
GA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
GA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
GA [auth e]IPR001706Large ribosomal subunit protein bL35Family
GA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
FA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
FA [auth d]IPR000271Large ribosomal subunit protein bL34Family
EA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
EA [auth c]IPR001705Large ribosomal subunit protein bL33Family
EA [auth c]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
DA [auth b]IPR002677Large ribosomal subunit protein bL32Family
DA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
CA [auth a]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth a]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
CA [auth a]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth a]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
BA [auth Z]IPR050063Universal ribosomal protein uL29Family
BA [auth Z]IPR001854Large ribosomal subunit protein uL29Family
BA [auth Z]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth Z]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
AA [auth Y]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth Y]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AA [auth Y]IPR026569Large ribosomal subunit protein bL28Family
AA [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Z [auth X]IPR001684Large ribosomal subunit protein bL27Family
Z [auth X]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Y [auth W]IPR020055Ribosomal protein bL25, short-formFamily
Y [auth W]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
Y [auth W]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Y [auth W]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
Y [auth W]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
X [auth V]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
X [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth V]IPR003256Large ribosomal subunit protein uL24Family
X [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth V]IPR005824KOWDomain
X [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth U]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
V [auth T]IPR001063Large ribosomal subunit protein uL22Family
V [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
V [auth T]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
V [auth T]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
U [auth S]IPR001787Large ribosomal subunit protein bL21Family
U [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth S]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
T [auth R]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
T [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
T [auth R]IPR005813Large ribosomal subunit protein bL20Family
S [auth Q]IPR001857Large ribosomal subunit protein bL19Family
S [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
S [auth Q]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
S [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
R [auth P]IPR057268Large ribosomal subunit protein uL18Family
R [auth P]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
Q [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Q [auth O]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
Q [auth O]IPR000456Large ribosomal subunit protein bL17Family
P [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
P [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
P [auth N]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
P [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
P [auth N]IPR047873Large ribosomal subunit protein uL16Family
O [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth M]IPR030878Large ribosomal subunit protein uL15Family
O [auth M]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth M]IPR063184Ribosomal protein uL15, N-terminal regionDomain
O [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
N [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth L]IPR000218Large ribosomal subunit protein uL14Family
N [auth L]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth L]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
M [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
M [auth K]IPR005822Large ribosomal subunit protein uL13Family
M [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
M [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
L [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
L [auth J]IPR000911Ribosomal protein uL11Family
L [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
L [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
L [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
L [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
K [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
K [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
K [auth I]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
K [auth I]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
K [auth I]IPR022973Large ribosomal subunit protein uL10, bacteriaFamily
J [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
J [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
J [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
J [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
J [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR000244Large ribosomal subunit protein bL9Family