5N2C | pdb_00005n2c

Crystal structure of the peptidoglycan-associated lipoprotein from Burkholderia cenocepacia

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5n2cc_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
B	d5n2cb_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
A	d5n2ca_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	OmpA-like	8074162	4001470	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	OmpA-like	8074163	3001650	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	OmpA-like	8074163	3001650	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	OmpA-like	8074163	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Phage_integrase	e5n2cC1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: SSHS domain in CRISPR-associated endonuclease Cas9	T: SSHS domain in CRISPR-associated endonuclease Cas9	F: Phage_integrase	ECOD (v294.1)
B	Phage_integrase	e5n2cB1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: SSHS domain in CRISPR-associated endonuclease Cas9	T: SSHS domain in CRISPR-associated endonuclease Cas9	F: Phage_integrase	ECOD (v294.1)
A	Phage_integrase	e5n2cA1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: SSHS domain in CRISPR-associated endonuclease Cas9	T: SSHS domain in CRISPR-associated endonuclease Cas9	F: Phage_integrase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Putative OmpA family lipoprotein	-	cellular process cell division	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR006664	Outer membrane protein, bacterial	Domain
A, B, C	IPR006665	OmpA-like domain	Domain
A, B, C	IPR039001	Peptidoglycan-associated lipoprotein	Family
A, B, C	IPR006690	Outer membrane protein, OmpA-like, conserved site	Conserved Site
A, B, C	IPR014169	Peptidoglycan-associated lipoprotein, C-terminal	Domain
A, B, C	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
A, B, C	IPR036737	OmpA-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.