5MYU | pdb_00005myu

VipA-N2/VipB contracted sheath of type VI secretion system

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth F]	Rogdi_lz	e5myuF1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
J [auth E]	Rogdi_lz	e5myuE1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
H [auth D]	Rogdi_lz	e5myuD1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
F [auth C]	Rogdi_lz	e5myuC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
D [auth B]	Rogdi_lz	e5myuB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
B [auth A]	Rogdi_lz	e5myuA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
K [auth f]	Rogdi_lz	e5myuf1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
I [auth e]	Rogdi_lz	e5myue1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
G [auth d]	Rogdi_lz	e5myud1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
E [auth c]	Rogdi_lz	e5myuc1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
C [auth b]	Rogdi_lz	e5myub1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)
A [auth a]	Rogdi_lz	e5myua1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], L [auth F]	PF05943	EvpB/VC_A0108, tail sheath N-terminal domain (VipB)	EvpB/VC_A0108, tail sheath N-terminal domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].	Domain
B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], L [auth F]	PF18945	EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)	EvpB/VC_A0108, tail sheath gpW/gp25-like domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], L [auth F]	IPR010269	Type VI secretion system TssC-like	Family
B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], L [auth F]	IPR044032	TssC1, C-terminal	Domain
B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], B [auth A], D [auth B], F [auth C], H [auth D], J [auth E], L [auth F]	IPR044031	TssC1, N-terminal	Domain
A [auth a], C [auth b], E [auth c], G [auth d], I [auth e], A [auth a], C [auth b], E [auth c], G [auth d], I [auth e], K [auth f]	IPR008312	Type VI secretion system sheath protein TssB1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.