5MV9 | pdb_00005mv9

Structure of human Myosin 7a C-terminal MyTH4-FERM domain in complex with harmonin-a PDZ3 domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PDZ domain-like	8084842	3000388	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IRS_1	e5mv9A2	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: IRS_1	ECOD (1.6)
A	FERM_M	e5mv9A4	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
A	MyTH4	e5mv9A3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
A	RA_2	e5mv9A1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)
B	PDZ	e5mv9B1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (utative)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02174	PTB domain (IRS-1 type) (IRS)	PTB domain (IRS-1 type)		Domain
A	PF21989	RA like domain (RA_2)	RA like domain		Domain
A	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain
A	PF00784	MyTH4 domain (MyTH4)	MyTH4 domain	-	Family
B	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Unconventional myosin-VIIa	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding calmodulin binding identical protein binding spectrin binding protein domain specific binding polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation animal organ morphogenesis system development embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization localization macromolecule localization intracellular protein localization import into cell vacuole organization organelle assembly lytic vacuole organization transport phagosome maturation establishment of localization vesicle-mediated transport cellular component biogenesis vesicle organization lysosome organization organelle organization cellular component assembly phagolysosome assembly phagocytosis endocytosis system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus vesicle localization establishment of organelle localization cellular localization establishment of vesicle localization cellular pigmentation pigment granule transport establishment of pigment granule localization pigmentation pigment granule localization organelle localization establishment of localization in cell actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament-based movement sensory perception of light stimulus photoreceptor cell differentiation visual system development eye morphogenesis eye photoreceptor cell differentiation sensory system development photoreceptor cell development eye photoreceptor cell development eye development establishment of protein localization nitrogen compound transport intracellular transport protein transport intracellular protein transport neuromuscular process equilibrioception neuromuscular process controlling balance visual perception	cellular anatomical structure membrane photoreceptor inner segment membrane-bounded organelle ciliary transition zone non-motile cilium 9+0 non-motile cilium cilium neuron projection plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle photoreceptor connecting cilium cellular anatomical structure membrane photoreceptor inner segment membrane-bounded organelle ciliary transition zone non-motile cilium 9+0 non-motile cilium cilium neuron projection plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle photoreceptor connecting cilium stereocilium base stereocilium actin-based cell projection stereocilium bundle cluster of actin-based cell projections intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol upper tip-link density stereocilia tip link stereocilia tip-link density stereocilia coupling link photoreceptor outer segment myosin VII complex protein-containing complex myosin complex unconventional myosin complex vacuolar membrane lytic vacuole vacuole intracellular membrane-bounded organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome microvillus pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle cell periphery cell cortex apical part of cell plasma membrane plasma membrane region apical plasma membrane synapse cell junction
B	cDNA FLJ51329, highly similar to Harmonin	cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis multicellular organismal process inner ear receptor cell development cellular developmental process sensory organ development epidermis development cell development embryo development cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis multicellular organismal process inner ear receptor cell development cellular developmental process sensory organ development epidermis development cell development embryo development cell morphogenesis epithelial cell differentiation hair cell differentiation multicellular organism development neurogenesis neuron differentiation inner ear development cell differentiation anatomical structure development animal organ morphogenesis auditory receptor cell morphogenesis embryonic organ development system development developmental process ear morphogenesis embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation ear development embryonic morphogenesis animal organ development nervous system development inner ear auditory receptor cell differentiation tissue development cell morphogenesis involved in neuron differentiation inner ear receptor cell differentiation generation of neurons anatomical structure morphogenesis sensory organ morphogenesis inner ear morphogenesis neuron development auditory receptor cell development sensory perception of light stimulus system process sensory perception nervous system process actin cytoskeleton organization actin filament organization organelle organization parallel actin filament bundle assembly actin filament bundle organization actin filament bundle assembly actin filament-based process supramolecular fiber organization cytoskeleton organization brush border assembly localization macromolecule localization protein localization to microvillus intracellular protein localization multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance neuromuscular process equilibrioception neuromuscular process controlling balance cell projection organization neuron projection development plasma membrane bounded cell projection organization inner ear receptor cell stereocilium organization sensory perception of sound sensory perception of mechanical stimulus cell cycle G2/M phase transition mitotic cell cycle process G2/M transition of mitotic cell cycle cell cycle phase transition cell cycle mitotic cell cycle cell cycle process mitotic cell cycle phase transition photoreceptor cell differentiation visual system development retina development in camera-type eye neural retina development eye morphogenesis retinal cone cell differentiation eye photoreceptor cell differentiation sensory system development photoreceptor cell development camera-type eye morphogenesis eye development eye photoreceptor cell development retinal cone cell development camera-type eye photoreceptor cell differentiation retina morphogenesis in camera-type eye camera-type eye development regulation of biological process regulation of cellular component organization regulation of cellular process regulation of cellular component size regulation of cell projection organization biological regulation regulation of cell projection size regulation of microvillus length microvillus organization regulation of microvillus organization regulation of biological quality regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection apical part of cell photoreceptor inner segment protein-containing complex stereocilia ankle link stereocilia ankle link complex stereocilium bundle stereocilia coupling link cluster of actin-based cell projections membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection apical part of cell photoreceptor inner segment protein-containing complex stereocilia ankle link stereocilia ankle link complex stereocilium bundle stereocilia coupling link cluster of actin-based cell projections stereocilium actin-based cell projection stereocilium tip neuron projection intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane brush border non-motile cilium 9+0 non-motile cilium photoreceptor outer segment photoreceptor cell cilium intracellular organelle cytoskeleton membraneless organelle intracellular membraneless organelle synapse cell junction microvillus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR041794	Myosin VII, FERM domain C-lobe, repeat 2	Domain
A	IPR000299	FERM domain	Domain
A	IPR019748	FERM central domain	Domain
A	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A	IPR000048	IQ motif, EF-hand binding site	Binding Site
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR000857	MyTH4 domain	Domain
A	IPR001452	SH3 domain	Domain
A	IPR036106	Class VII myosin, motor domain	Domain
A	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A	IPR001609	Myosin head, motor domain-like	Domain
A	IPR002404	IRS-type PTB domain	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR051567	Unconventional Myosin ATPase	Family
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
A	IPR019749	Band 4.1 domain	Domain
A	IPR041793	Myosin VII, FERM domain C-lobe, repeat 1	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B	IPR051844	Sensory Perception USH2 Complex Protein	Family
B	IPR030237	Harmonin, N-terminal	Domain
B	IPR036034	PDZ superfamily	Homologous Superfamily
B	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q13402	Usher syndrome nonsyndromic genetic deafness autosomal dominant nonsyndromic deafness 11 autosomal recessive nonsyndromic deafness 2 Usher syndrome type 1B Usher syndrome type 2 retinitis pigmentosa melanoma retinal degeneration Leber congenital amaurosis Usher syndrome type 3 Usher syndrome, type 1A adrenal cortex carcinoma cone-rod dystrophy large cell medulloblastoma Usher syndrome nonsyndromic genetic deafness autosomal dominant nonsyndromic deafness 11 autosomal recessive nonsyndromic deafness 2 Usher syndrome type 1B Usher syndrome type 2 retinitis pigmentosa melanoma retinal degeneration Leber congenital amaurosis Usher syndrome type 3 Usher syndrome, type 1A adrenal cortex carcinoma cone-rod dystrophy large cell medulloblastoma malignant glioma subependymal giant cell astrocytoma X-linked mixed deafness with perilymphatic gusher cutaneous melanoma medulloblastoma osteosarcoma intellectual disability malignant ependymoma pituitary cancer retinitis pigmentosa-deafness syndrome
B	Pharos: Q9Y6N9	nonsyndromic genetic deafness autosomal recessive nonsyndromic deafness 18A Usher syndrome type 1C Usher syndrome Usher syndrome, type 1C retinitis pigmentosa Usher syndrome type 1B lung cancer nephrosclerosis pancreatic intraductal papillary-mucinous carcinoma pituitary cancer cone-rod dystrophy lung carcinoma pancreatic intraductal papillary-mucinous neoplasm psoriasis nonsyndromic genetic deafness autosomal recessive nonsyndromic deafness 18A Usher syndrome type 1C Usher syndrome Usher syndrome, type 1C retinitis pigmentosa Usher syndrome type 1B lung cancer nephrosclerosis pancreatic intraductal papillary-mucinous carcinoma pituitary cancer cone-rod dystrophy lung carcinoma pancreatic intraductal papillary-mucinous neoplasm psoriasis esophageal adenocarcinoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia retinal degeneration