5MPO | pdb_00005mpo

Crystal structure of human molybdopterin synthase complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5mpoc_	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	Molybdopterin synthase subunit MoaE	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5mpod_	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	Molybdopterin synthase subunit MoaE	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	MoaD/ThiS-like	8079857	3000330	SCOP2B (2022-06-29)
B	SCOP2 Family	MoaD	8079856	4000980	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	MoaD/ThiS-like	8079857	3000330	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TP_methylase	e5mpoA1	A: a/b three-layered sandwiches	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (v294.1)
B	TP_methylase	e5mpoB1	A: a/b three-layered sandwiches	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (v294.1)
C	TP_methylase	e5mpoC1	A: a/b three-layered sandwiches	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (v294.1)
D	TP_methylase	e5mpoD1	A: a/b three-layered sandwiches	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
B	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
C	3.90.1170.40	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)
D	3.90.1170.40	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02597	ThiS family (ThiS)	ThiS family	ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Swiss:O32583. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the a ...	ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Swiss:O32583. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS [1]. MoaD, Swiss:P30748 a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.	Domain
C, D	PF02391	MoaE protein (MoaE)	MoaE protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Molybdopterin synthase sulfur carrier subunit	sulfurtransferase activity molybdopterin synthase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process primary metabolic process prosthetic group metabolic process molybdopterin cofactor biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process primary metabolic process prosthetic group metabolic process molybdopterin cofactor biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol molybdopterin synthase complex protein-containing complex catalytic complex sulfurtransferase complex transferase complex
C, D	Molybdopterin synthase catalytic subunit	sulfurtransferase activity molybdopterin synthase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	primary metabolic process molybdopterin cofactor biosynthetic process prosthetic group metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process Mo-molybdopterin cofactor biosynthetic process primary metabolic process molybdopterin cofactor biosynthetic process prosthetic group metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol molybdopterin synthase complex protein-containing complex catalytic complex sulfurtransferase complex transferase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol molybdopterin synthase complex protein-containing complex catalytic complex sulfurtransferase complex transferase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003749	Sulfur carrier ThiS/MoaD-like	Family
A, B	IPR016155	Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp	Homologous Superfamily
A, B	IPR044672	Molybdopterin synthase sulfur carrier subunit	Family
A, B	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
A, B	IPR028887	Molybdopterin synthase sulfur carrier subunit, eukaryote	Family
C, D	IPR036563	Molybdopterin biosynthesis MoaE subunit superfamily	Homologous Superfamily
C, D	IPR003448	Molybdopterin biosynthesis MoaE	Family
C, D	IPR028888	Molybdopterin synthase catalytic subunit, eukaryotes	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O96033	sulfite oxidase deficiency due to molybdenum cofactor deficiency type B sulfite oxidase deficiency due to molybdenum cofactor deficiency atypical teratoid rhabdoid tumor glioblastoma intellectual disability malignant glioma Pick disease sulfite oxidase deficiency due to molybdenum cofactor deficiency type A brain disease hereditary spastic paraplegia isolated sulfite oxidase deficiency medulloblastoma psoriasis Epileptic encephalopathy hereditary xanthinuria sulfite oxidase deficiency due to molybdenum cofactor deficiency type B sulfite oxidase deficiency due to molybdenum cofactor deficiency atypical teratoid rhabdoid tumor glioblastoma intellectual disability malignant glioma Pick disease sulfite oxidase deficiency due to molybdenum cofactor deficiency type A brain disease hereditary spastic paraplegia isolated sulfite oxidase deficiency medulloblastoma psoriasis Epileptic encephalopathy hereditary xanthinuria large cell medulloblastoma pancreatic ductal adenocarcinoma tuberculosis
C, D	Pharos: O96007	sulfite oxidase deficiency due to molybdenum cofactor deficiency type B sulfite oxidase deficiency due to molybdenum cofactor deficiency atypical teratoid rhabdoid tumor glioblastoma intellectual disability malignant glioma Pick disease sulfite oxidase deficiency due to molybdenum cofactor deficiency type A brain disease hereditary spastic paraplegia isolated sulfite oxidase deficiency medulloblastoma psoriasis Epileptic encephalopathy hereditary xanthinuria sulfite oxidase deficiency due to molybdenum cofactor deficiency type B sulfite oxidase deficiency due to molybdenum cofactor deficiency atypical teratoid rhabdoid tumor glioblastoma intellectual disability malignant glioma Pick disease sulfite oxidase deficiency due to molybdenum cofactor deficiency type A brain disease hereditary spastic paraplegia isolated sulfite oxidase deficiency medulloblastoma psoriasis Epileptic encephalopathy hereditary xanthinuria large cell medulloblastoma pancreatic ductal adenocarcinoma tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.