5MPF | pdb_00005mpf

Structural Basis of Gene Regulation by the Grainyhead Transcription Factor Superfamily

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5mpfB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Parafibromin N-terminal domain	T: Parafibromin N-terminal domain	F:	ECOD (v294.1)
A		e5mpfA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Parafibromin N-terminal domain	T: Parafibromin N-terminal domain	F:	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Grainyhead-like protein 1 homolog	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific identical protein binding protein binding protein homodimerization activity protein dimerization activity chromatin binding chromatin DNA binding transcription factor binding DNA-binding transcription factor binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	cellular component organization cell junction organization desmosome organization cellular process cellular component organization or biogenesis cell-cell junction organization developmental process establishment of skin barrier epithelium development skin development skin epidermis development epidermis development anatomical structure development animal organ development cellular component organization cell junction organization desmosome organization cellular process cellular component organization or biogenesis cell-cell junction organization developmental process establishment of skin barrier epithelium development skin development skin epidermis development epidermis development anatomical structure development animal organ development tissue development multicellular organismal process regulation of cellular process cellular developmental process regulation of developmental process regulation of epidermal cell differentiation regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation multicellular organism development cell differentiation regulation of multicellular organismal process regulation of biological process regulation of multicellular organismal development epidermal cell differentiation biological regulation keratinocyte differentiation regulation of epidermis development regulation of keratinocyte differentiation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
C [auth E], D [auth F]	DNA (5'-D(APAPAPAPCPCPGPGPTPTPTPT)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR057520	GRHL1/CP2, C-terminal domain	Domain
A, B	IPR007604	CP2 transcription factor	Domain
A, B	IPR040167	Transcription factor CP2-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9NZI5	ulcerative colitis breast cancer cystic fibrosis large cell medulloblastoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm psoriasis bronchitis exocrine pancreatic carcinoma malignant ependymoma medulloblastoma ovarian cancer pilocytic astrocytoma spina bifida ulcerative colitis breast cancer cystic fibrosis large cell medulloblastoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm psoriasis bronchitis exocrine pancreatic carcinoma malignant ependymoma medulloblastoma ovarian cancer pilocytic astrocytoma spina bifida chronic obstructive pulmonary disease interstitial cystitis malignant glioma nasopharyngeal carcinoma pancreatic ductal adenocarcinoma prostate carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.