Skip to main content

 5MP6 | pdb_00005mp6

Structure of the Unliganded Fab from HIV-1 Neutralizing Antibody CAP248-2B that Binds to the gp120 C-terminus - gp41 Interface, at two Angstrom resolution.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth H]d5mp6h_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
A [auth P]d5mp6p_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth L]d5mp6l2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth L]d5mp6l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth Q]d5mp6q2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth Q]d5mp6q1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth H]e5mp6H1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
A [auth P]e5mp6P1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
D [auth L]e5mp6L1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
B [auth Q]e5mp6Q1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth P]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth Q]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth P],
C [auth H]		PCA Parent Component: GLN

:  AA0031

:  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420
B [auth Q],
D [auth L]		PCA Parent Component: GLN

:  AA0031 , AA0031

:  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 , 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420