5MP4 | pdb_00005mp4

The structure of Pst2p from Saccharomyces cerevisiae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5mp4a_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
B	d5mp4b_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
C	d5mp4c_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
D	d5mp4d_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
E	d5mp4e_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
F	d5mp4f_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
G	d5mp4g_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
H	d5mp4h_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	WrbA-like	8088825	4003377	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Flavoproteins	8088826	3001217	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flavoproteins	8088826	3001217	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-H2C2_5	e5mp4A1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
B	zf-H2C2_5	e5mp4B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
C	zf-H2C2_5	e5mp4C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
D	zf-H2C2_5	e5mp4D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
E	zf-H2C2_5	e5mp4E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
F	zf-H2C2_5	e5mp4F1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
G	zf-H2C2_5	e5mp4G1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)
H	zf-H2C2_5	e5mp4H1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
B	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
C	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
D	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
E	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
F	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
G	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
H	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF03358	NADPH-dependent FMN reductase (FMN_red)	NADPH-dependent FMN reductase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Protoplast secreted protein 2	FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding oxidoreductase activity NAD(P)H dehydrogenase (quinone) activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding oxidoreductase activity NAD(P)H dehydrogenase (quinone) activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor catalytic activity identical protein binding protein binding	regulation of biological process positive regulation of programmed cell death regulation of cellular process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of ferroptosis cellular process regulation of ferroptosis ferroptosis programmed cell death positive regulation of cellular process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane extracellular region eisosome cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010089	Flavoprotein WrbA-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005025	NADPH-dependent FMN reductase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008254	Flavodoxin/nitric oxide synthase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029039	Flavoprotein-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.