5MJ2 | pdb_00005mj2

Extracellular domain of human CD83 - rhombohedral crystal form after UV-RIP (S-SAD data)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KH_NusA_2nd	e5mj2A1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: KH_NusA_2nd	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CD83 antigen	-	multicellular organismal process regulation of leukocyte differentiation regulation of cellular process regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell activation T cell activation multicellular organismal process regulation of leukocyte differentiation regulation of cellular process regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell activation T cell activation cell differentiation anatomical structure development positive regulation of leukocyte activation alpha-beta T cell activation regulation of immune system process T cell differentiation positive regulation of immune system process developmental process regulation of biological process positive regulation of T cell activation positive regulation of CD4-positive, alpha-beta T cell differentiation positive regulation of cell development positive regulation of alpha-beta T cell activation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process leukocyte differentiation positive regulation of alpha-beta T cell differentiation cellular developmental process regulation of developmental process positive regulation of biological process cell development positive regulation of leukocyte cell-cell adhesion regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation lymphocyte activation CD4-positive, alpha-beta T cell differentiation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of CD4-positive, alpha-beta T cell activation positive regulation of lymphocyte activation alpha-beta T cell differentiation cell adhesion cell-cell adhesion positive regulation of hemopoiesis positive regulation of cell differentiation CD4-positive, alpha-beta T cell activation regulation of multicellular organismal process regulation of cell-cell adhesion positive regulation of cellular process regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation biological regulation regulation of T cell activation regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of hemopoiesis cellular process positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation regulation of interleukin-4 production negative regulation of biological process negative regulation of interleukin-4 production regulation of cytokine production cytokine production negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process interleukin-4 production regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process humoral immune response response to stimulus immune response positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of interleukin-2 production interleukin-2 production positive regulation of interleukin-2 production positive regulation of gene expression positive regulation of cytokine production interleukin-10 production regulation of interleukin-10 production positive regulation of interleukin-10 production cellular response to stimulus signaling signal transduction cell communication defense response response to stress	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR013106	Immunoglobulin V-set domain	Domain
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q01151	rheumatoid arthritis Arsenic Poisoning juvenile idiopathic arthritis lymphoplasmacytic lymphoma MALT lymphoma ovarian cancer acute myeloid leukemia cutaneous lupus erythematosus gastric carcinoma lung cancer malignant ependymoma pituitary cancer skin disease hepatocellular carcinoma lung carcinoma rheumatoid arthritis Arsenic Poisoning juvenile idiopathic arthritis lymphoplasmacytic lymphoma MALT lymphoma ovarian cancer acute myeloid leukemia cutaneous lupus erythematosus gastric carcinoma lung cancer malignant ependymoma pituitary cancer skin disease hepatocellular carcinoma lung carcinoma malignant mesothelioma non-small cell lung carcinoma psoriasis ulcerative colitis B-cell chronic lymphocytic leukemia gastric cancer interstitial cystitis lung adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.