5MFD | pdb_00005mfd

Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Head decoration protein D (gpD, major capsid protein D)	8043128	3001943	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HDPD	e5mfdH1	A: beta barrels	X: beta-clip	H: Head decoration protein D (gpD, major capsid protein D) (From Topology)	T: Head decoration protein D (gpD, major capsid protein D)	F: HDPD	ECOD (1.6)
F	HDPD	e5mfdF1	A: beta barrels	X: beta-clip	H: Head decoration protein D (gpD, major capsid protein D) (From Topology)	T: Head decoration protein D (gpD, major capsid protein D)	F: HDPD	ECOD (1.6)
D	HDPD	e5mfdD1	A: beta barrels	X: beta-clip	H: Head decoration protein D (gpD, major capsid protein D) (From Topology)	T: Head decoration protein D (gpD, major capsid protein D)	F: HDPD	ECOD (1.6)
B	HDPD	e5mfdB1	A: beta barrels	X: beta-clip	H: Head decoration protein D (gpD, major capsid protein D) (From Topology)	T: Head decoration protein D (gpD, major capsid protein D)	F: HDPD	ECOD (1.6)
L	Arm	e5mfdL1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
K	Arm	e5mfdK2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
J	Arm	e5mfdJ1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
I	Arm	e5mfdI2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
G	Arm	e5mfdG2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
E	Arm	e5mfdE1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
C	Arm	e5mfdC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)
A	Arm	e5mfdA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Arm	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.300.10	Mainly Beta	Beta Barrel	Virus Head Decoration Protein	Chain: A,	CATH (4.3.0)
F	2.40.300.10	Mainly Beta	Beta Barrel	Virus Head Decoration Protein	Chain: A,	CATH (4.3.0)
D	2.40.300.10	Mainly Beta	Beta Barrel	Virus Head Decoration Protein	Chain: A,	CATH (4.3.0)
B	2.40.300.10	Mainly Beta	Beta Barrel	Virus Head Decoration Protein	Chain: A,	CATH (4.3.0)
I	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF02924	Bacteriophage lambda head decoration protein D (HDPD)	Bacteriophage lambda head decoration protein D		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Capsid decoration protein,pD_(KR)5	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	viral capsid virion component viral capsid, decoration host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
A, C, E, G, I A, C, E, G, I, J, K, L	YIIIM''6AII	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR004195	Head decoration protein D	Family
B, D, F, H	IPR036630	Head decoration protein D superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.