5ME6 | pdb_00005me6

Crystal Structure of eiF4E from C. melo bound to a CAP analog

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5me6a1	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	Muskmelon (Cucumis melo ) [TaxId: 3656 ],	SCOPe (2.08)
A	d5me6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Muskmelon (Cucumis melo ) [TaxId: 3656 ],	SCOPe (2.08)
B	d5me6b_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	Muskmelon (Cucumis melo ) [TaxId: 3656 ],	SCOPe (2.08)
C	d5me6c_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	Muskmelon (Cucumis melo ) [TaxId: 3656 ],	SCOPe (2.08)
D	d5me6d_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	Muskmelon (Cucumis melo ) [TaxId: 3656 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Translation initiation factor eIF4e	8072943	4001578	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	eIF4e-like	8072944	3001871	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Abhydrolase_3, BD-FAE	e5me6A1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
B	Abhydrolase_3, BD-FAE	e5me6B1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
C	Abhydrolase_3, BD-FAE	e5me6C1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
D	Abhydrolase_3, BD-FAE	e5me6D1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
B	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
C	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
D	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01652	Eukaryotic initiation factor 4E (IF4E)	Eukaryotic initiation factor 4E		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Eukaryotic transcription initiation factor 4E	translation factor activity translation initiation factor activity RNA binding binding RNA 7-methylguanosine cap binding nucleic acid binding RNA cap binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex eukaryotic translation initiation factor 4F complex RNA cap binding complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023398	Translation Initiation factor eIF- 4e-like	Homologous Superfamily
A, B, C, D	IPR019770	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	Conserved Site
A, B, C, D	IPR001040	Translation Initiation factor eIF- 4e	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.