5MCY | pdb_00005mcy

The structure of the mature HIV-1 CA pentamer in intact virus particles

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T [auth f]	Gag_p24_C	e5mcyf2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
T [auth f]	Gag_p24_N	e5mcyf1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
S [auth c]	Gag_p24_C	e5mcyc2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
S [auth c]	Gag_p24_N	e5mcyc1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
R [auth Z]	Gag_p24_C	e5mcyZ2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
R [auth Z]	Gag_p24_N	e5mcyZ1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
Q [auth h]	Gag_p24_C	e5mcyh1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
Q [auth h]	Gag_p24_N	e5mcyh2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
P [auth e]	Gag_p24_C	e5mcye1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
P [auth e]	Gag_p24_N	e5mcye2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
O [auth b]	Gag_p24_C	e5mcyb1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
O [auth b]	Gag_p24_N	e5mcyb2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
N [auth g]	Gag_p24_C	e5mcyg2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
N [auth g]	Gag_p24_N	e5mcyg1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
M [auth d]	Gag_p24_C	e5mcyd1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
M [auth d]	Gag_p24_N	e5mcyd2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
L [auth G]	Gag_p24_C	e5mcyG2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
L [auth G]	Gag_p24_N	e5mcyG1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
K [auth O]	Gag_p24_C	e5mcyO2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
K [auth O]	Gag_p24_N	e5mcyO1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
J [auth N]	Gag_p24_C	e5mcyN2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
J [auth N]	Gag_p24_N	e5mcyN1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
I [auth M]	Gag_p24_C	e5mcyM1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
I [auth M]	Gag_p24_N	e5mcyM2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
H [auth Q]	Gag_p24_C	e5mcyQ1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
H [auth Q]	Gag_p24_N	e5mcyQ2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
G [auth P]	Gag_p24_C	e5mcyP2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
G [auth P]	Gag_p24_N	e5mcyP1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
F [auth T]	Gag_p24_C	e5mcyT1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
F [auth T]	Gag_p24_N	e5mcyT2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
E [auth S]	Gag_p24_C	e5mcyS2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
E [auth S]	Gag_p24_N	e5mcyS1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
D [auth R]	Gag_p24_C	e5mcyR2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
D [auth R]	Gag_p24_N	e5mcyR1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
C [auth F]	Gag_p24_C	e5mcyF1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
C [auth F]	Gag_p24_N	e5mcyF2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
B	Gag_p24_C	e5mcyB2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
B	Gag_p24_N	e5mcyB1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)
A	Gag_p24_C	e5mcyA1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: Gag_p24_C	ECOD (1.6)
A	Gag_p24_N	e5mcyA2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: Gag_p24_N	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	Capsid protein p24	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural molecule activity cation binding transition metal ion binding zinc ion binding metal ion binding RNA binding nucleic acid binding	viral gene expression viral process viral translational frameshifting viral translation	host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region virion component virion membrane host cell nucleus host cell plasma membrane host cell membrane viral nucleocapsid viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR000071	Immunodeficiency lentiviral matrix, N-terminal	Domain
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, B, C [auth F], D [auth R], E [auth S], A, B, C [auth F], D [auth R], E [auth S], F [auth T], G [auth P], H [auth Q], I [auth M], J [auth N], K [auth O], L [auth G], M [auth d], N [auth g], O [auth b], P [auth e], Q [auth h], R [auth Z], S [auth c], T [auth f]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily