5M0Y
Crystal Structure of the CohScaA-XDocCipB type II complex from Clostridium thermocellum at 1.5Angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5m0yb2 | All alpha proteins | Type I dockerin domain | Type I dockerin domain | automated matches | automated matches | (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], | SCOPe (2.08) |
A [auth B] | d5m0yb1 | All beta proteins | Prealbumin-like | Carboxypeptidase regulatory domain-like | automated matches | automated matches | (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], | SCOPe (2.08) |
B [auth A] | d5m0ya1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Carbohydrate-binding domain | Cellulose-binding domain family III | automated matches | (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], | SCOPe (2.08) |
B [auth A] | d5m0ya2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | F_UNCLASSIFIED | e5m0yB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | PF00404 | e5m0yB2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: Type I dockerin domain | F: PF00404 | ECOD (1.6) |
B [auth A] | PF00963 | e5m0yA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00963 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.60.40.1120 | Mainly Beta | Sandwich | Immunoglobulin-like | Carboxypeptidase-like, regulatory domain | CATH (4.3.0) |
A [auth B] | 1.10.1330.10 | Mainly Alpha | Orthogonal Bundle | Type 1 dockerin domain | Dockerin domain | CATH (4.3.0) |
B [auth A] | 2.60.40.680 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00404 | Dockerin type I domain (Dockerin_1) | Dockerin type I domain | The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calciu ... | Domain |
B [auth A] | PF00963 | Cohesin domain (Cohesin) | Cohesin domain | Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR002105 | Dockerin type I repeat | Repeat |
A [auth B] | IPR016134 | Dockerin domain | Domain |
A [auth B] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth B] | IPR018247 | EF-Hand 1, calcium-binding site | Binding Site |
A [auth B] | IPR036439 | Dockerin domain superfamily | Homologous Superfamily |
A [auth B] | IPR003343 | Bacterial Ig-like domain, group 2 | Domain |
A [auth B] | IPR008969 | Carboxypeptidase-like, regulatory domain superfamily | Homologous Superfamily |
A [auth B] | IPR008964 | Invasin/intimin cell-adhesion fragments | Homologous Superfamily |
B [auth A] | IPR008965 | CBM2/CBM3, carbohydrate-binding domain superfamily | Homologous Superfamily |
B [auth A] | IPR002102 | Cellulosome anchoring protein, cohesin domain | Domain |
B [auth A] | IPR001119 | S-layer homology domain | Domain |