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 5LWF | pdb_00005lwf

Structure of a single domain camelid antibody fragment cAb-G10S in complex with the BlaP beta-lactamase from Bacillus licheniformis

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd5lwfd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5lwfd2 Artifacts Tags Tags Tags N-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Cd5lwfc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Cd5lwfc2 Artifacts Tags Tags Tags N-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Bd5lwfb_ Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase automated matches (Bacillus licheniformis ) [TaxId: 1402 ], SCOPe (2.08)
Ad5lwfa_ Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase automated matches (Bacillus licheniformis ) [TaxId: 1402 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B Superfamilybeta-lactamase/transpeptidase-like 8037344 3001604 SCOP2B (2022-06-29)
ASCOP2B Superfamilybeta-lactamase/transpeptidase-like 8037344 3001604 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPriXe5lwfD1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
CPBS_linker_polye5lwfC1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: PBS_linker_polyECOD (v295.2)
BPriXe5lwfB1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
APBS_linker_polye5lwfA1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: PBS_linker_polyECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)
A3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C, D
Camelid Antibody Fragment cAb-G10S VH Lama glama (llama) IGHV3S3*01, IGHJ4*01 V-DOMAIN VH IG VH IMGT (202639-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C, D
Heavy ChainIGHV1 -beta-lactamaseSAbDab (2026-10-09)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, D
Camelid heavy-chain antibody variable fragment cAb-G10S---
A, B
Beta-lactamase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR045155Beta-lactamase class A, catalytic domainDomain
A, B
IPR012338Beta-lactamase/transpeptidase-likeHomologous Superfamily
A, B
IPR000871Beta-lactamase, class-AFamily
A, B
IPR023650Beta-lactamase, class-A active siteActive Site
A, B
IPR058139Beta-lactamase BlaC, bacilliFamily