5LTQ | pdb_00005ltq

Structure of the Yellow Fluorescent Protein lanYFP from Branchiostoma lanceolatum at pH 7.5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5ltqa1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
A	d5ltqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
B [auth D]	d5ltqd1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
B [auth D]	d5ltqd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
C [auth B]	d5ltqb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
C [auth B]	d5ltqb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
D [auth C]	d5ltqc1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
D [auth C]	d5ltqc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
E	d5ltqe_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
F [auth H]	d5ltqh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
I	d5ltqi_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
K [auth J]	d5ltqj1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
K [auth J]	d5ltqj2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
L [auth K]	d5ltqk_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
M	d5ltqm_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
N [auth P]	d5ltqp1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
N [auth P]	d5ltqp2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
O [auth N]	d5ltqn1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
O [auth N]	d5ltqn2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
P [auth O]	d5ltqo_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
J [auth L]	d5ltql1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
J [auth L]	d5ltql2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
H [auth G]	d5ltqg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
G [auth F]	d5ltqf1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
G [auth F]	d5ltqf2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Common lancelet (Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GFP	e5ltqA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B [auth D]	GFP	e5ltqD1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
C [auth B]	GFP	e5ltqB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
D [auth C]	GFP	e5ltqC1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
E	GFP	e5ltqE1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
F [auth H]	GFP	e5ltqH1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
I	GFP	e5ltqI1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
K [auth J]	GFP	e5ltqJ1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
L [auth K]	GFP	e5ltqK1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
M	GFP	e5ltqM1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
N [auth P]	GFP	e5ltqP1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
O [auth N]	GFP	e5ltqN1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
P [auth O]	GFP	e5ltqO1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
J [auth L]	GFP	e5ltqL1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
H [auth G]	GFP	e5ltqG1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
G [auth F]	GFP	e5ltqF1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B [auth D]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C [auth B]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D [auth C]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F [auth H]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
I	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
K [auth J]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
L [auth K]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
M	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
N [auth P]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
O [auth N]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
P [auth O]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
J [auth L]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
H [auth G]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G [auth F]	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D], C [auth B], D [auth C], E, A, B [auth D], C [auth B], D [auth C], E, F [auth H], G [auth F], H [auth G], I, J [auth L], K [auth J], L [auth K], M, N [auth P], O [auth N], P [auth O]	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D], C [auth B], D [auth C], E, A, B [auth D], C [auth B], D [auth C], E, F [auth H], G [auth F], H [auth G], I, J [auth L], K [auth J], L [auth K], M, N [auth P], O [auth N], P [auth O]	Green fluorescent protein blFP-Y3	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D], C [auth B], D [auth C], E, A, B [auth D], C [auth B], D [auth C], E, F [auth H], G [auth F], H [auth G], I, J [auth L], K [auth J], L [auth K], M, N [auth P], O [auth N], P [auth O]	IPR011584	Green fluorescent protein-related	Family
A, B [auth D], C [auth B], D [auth C], E, A, B [auth D], C [auth B], D [auth C], E, F [auth H], G [auth F], H [auth G], I, J [auth L], K [auth J], L [auth K], M, N [auth P], O [auth N], P [auth O]	IPR009017	Green fluorescent protein	Homologous Superfamily