5LT2

nucleotide-free kinesin-1 motor domain, P1 crystal form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)
F [auth K]	SCOP2B Superfamily	P-loop motor domain	8044305	3002036	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00225	e5lt2A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)
B	PF00225	e5lt2B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)
C	PF00225	e5lt2C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)
D	PF00225	e5lt2D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)
E	PF00225	e5lt2E1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)
F [auth K]	PF00225	e5lt2K1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00225	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
B	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
C	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
D	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
E	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
F [auth K]	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F [auth K]	PF00225	Kinesin motor domain (Kinesin)	Kinesin motor domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F [auth K]	Kinesin-like protein	microtubule motor activity cytoskeletal motor activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding microtubule motor activity cytoskeletal motor activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding cell adhesion molecule binding cadherin binding protein-containing complex binding plus-end-directed microtubule motor activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding	protein localization establishment of protein localization cellular localization nitrogen compound transport protein localization to synapse transport protein transport along microtubule microtubule-based protein transport localization cellular macromolecule localization establishment of localization in cell transport along microtubule anterograde axonal transport organic substance transport protein localization establishment of protein localization cellular localization nitrogen compound transport protein localization to synapse transport protein transport along microtubule microtubule-based protein transport localization cellular macromolecule localization establishment of localization in cell transport along microtubule anterograde axonal transport organic substance transport axo-dendritic protein transport anterograde axonal protein transport intracellular transport axonal transport establishment of localization protein localization to presynapse axo-dendritic transport protein transport macromolecule localization microtubule-based transport cellular process microtubule-based process cytoskeleton-dependent intracellular transport microtubule-based movement protein localization to cell junction intracellular protein transport cellular component disassembly protein-containing complex organization protein-containing complex disassembly protein-RNA complex disassembly cellular component organization organelle organization protein-RNA complex organization organelle disassembly cellular component organization or biogenesis stress granule disassembly centrosome localization microtubule organizing center localization establishment of organelle localization vesicle cytoskeletal trafficking vesicle localization organelle transport along microtubule establishment of vesicle localization plus-end-directed organelle transport along microtubule vesicle transport along microtubule plus-end-directed vesicle transport along microtubule organelle localization positive regulation of protein localization to plasma membrane regulation of localization regulation of cellular process regulation of protein localization positive regulation of biological process regulation of protein localization to membrane positive regulation of cellular process positive regulation of protein localization to cell periphery regulation of biological process protein localization to cell periphery protein localization to plasma membrane biological regulation positive regulation of protein localization to membrane localization within membrane regulation of protein localization to cell periphery protein localization to membrane regulation of cellular localization positive regulation of protein localization regulation of protein localization to plasma membrane lysosome localization vacuolar localization positive regulation of cell communication signaling modulation of chemical synaptic transmission positive regulation of synaptic transmission, GABAergic cell communication synaptic signaling trans-synaptic signaling regulation of signaling synaptic transmission, GABAergic positive regulation of synaptic transmission cell-cell signaling chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of signaling regulation of synaptic transmission, GABAergic mitochondrion distribution mitocytosis establishment of mitochondrion localization export from cell mitochondrion localization migracytosis mitochondrion organization synaptic vesicle localization synaptic vesicle transport lymphocyte mediated immunity biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity response to biotic stimulus immune effector process immune system process defense response to other organism response to stress natural killer cell mediated cytotoxicity innate immune response leukocyte mediated immunity response to external biotic stimulus natural killer cell mediated immunity cell killing regulation of potassium ion transport regulation of transport regulation of monoatomic ion transport metal ion transport positive regulation of potassium ion transport positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport potassium ion transport monoatomic cation transport regulation of metal ion transport cellular response to stimulus response to organic substance response to type II interferon response to cytokine cellular response to type II interferon cellular response to cytokine stimulus cellular response to organic substance cellular response to chemical stimulus response to chemical dense core granule cytoskeletal transport retrograde neuronal dense core vesicle transport dense core granule localization secretory granule localization dense core granule transport retrograde axonal transport cytosolic transport regulation of biological quality regulation of membrane potential multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development anterograde neuronal dense core vesicle transport cytoplasm organization anterograde dendritic transport dendritic transport anterograde dendritic transport of neurotransmitter receptor complex protein-containing complex localization receptor localization to synapse establishment of mitochondrion localization, microtubule-mediated mitochondrion transport along microtubule	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane vesicle centrosome microtubule organizing center cytoskeleton centriolar satellite membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane vesicle centrosome microtubule organizing center cytoskeleton centriolar satellite intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle cytosol protein-containing complex microtubule associated complex kinesin complex intracellular vesicle phagocytic vesicle cytoplasmic vesicle endocytic vesicle neuron projection cytoplasm neuron projection cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection dendrite cytoplasm somatodendritic compartment cell projection dendrite dendritic tree vacuolar membrane lytic vacuole cytolytic granule vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane cytolytic granule membrane lysosome ciliary rootlet cilium perinuclear region of cytoplasm polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex axon axon cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F [auth K]	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth K]	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E, A, B, C, D, E, F [auth K]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth K]	IPR027640	Kinesin-like protein	Family
A, B, C, D, E, A, B, C, D, E, F [auth K]	IPR019821	Kinesin motor domain, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E, A, B, C, D, E, F [auth K]	Pharos: P33176	non-small cell lung carcinoma diabetes mellitus astrocytic tumor dermatomyositis glioblastoma pancreatic ductal adenocarcinoma progressive supranuclear palsy atypical teratoid rhabdoid tumor large cell medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma psoriasis cutaneous lupus erythematosus Down syndrome medulloblastoma non-small cell lung carcinoma diabetes mellitus astrocytic tumor dermatomyositis glioblastoma pancreatic ductal adenocarcinoma progressive supranuclear palsy atypical teratoid rhabdoid tumor large cell medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma psoriasis cutaneous lupus erythematosus Down syndrome medulloblastoma ovarian cancer primitive neuroectodermal tumor ulcerative colitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.