Annotations: 5LGD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L3	e5lgdB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L3	ECOD (v294.1)
A	Ribosomal_L3	e5lgdA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L3	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	PfEMP1 variant 1 of strain MC	host cell surface binding binding host cell surface receptor binding	-	cellular anatomical structure membrane host cellular component host cell part other organism part host cell surface
A	Platelet glycoprotein 4	amyloid-beta binding binding peptide binding protein binding signaling receptor binding Toll-like receptor binding protein-containing complex binding long-chain fatty acid transmembrane transporter activity lipid transmembrane transporter activity fatty acid transmembrane transporter activity oleate transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity amyloid-beta binding binding peptide binding protein binding signaling receptor binding Toll-like receptor binding protein-containing complex binding long-chain fatty acid transmembrane transporter activity lipid transmembrane transporter activity fatty acid transmembrane transporter activity oleate transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity transmembrane transporter activity lipoprotein particle binding protein-lipid complex binding high-density lipoprotein particle binding transforming growth factor beta binding growth factor binding cytokine binding molecular transducer activity signaling receptor activity thrombospondin receptor activity short-chain fatty acid transmembrane transporter activity lipoprotein particle receptor activity low-density lipoprotein particle receptor activity cargo receptor activity low-density lipoprotein particle binding lipid binding scavenger receptor activity lipoteichoic acid immune receptor activity pattern recognition receptor activity oxidised low-density lipoprotein particle receptor activity	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process multicellular organismal process catabolic process amyloid-beta metabolic process amyloid-beta clearance by cellular catabolic process amyloid-beta clearance cellular response to stimulus cellular response to low-density lipoprotein particle stimulus cellular response to oxidised low-density lipoprotein particle stimulus response to stimulus response to endogenous stimulus response to chemical response to lipoprotein particle cellular response to lipoprotein particle stimulus regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion cell-substrate adhesion positive regulation of cell-matrix adhesion cell adhesion cell-matrix adhesion positive regulation of cell-substrate adhesion regulation of cell-matrix adhesion organic anion transport carboxylic acid transport transport lipid localization lipid transport establishment of localization organic acid transport localization monocarboxylic acid transport fatty acid transport macromolecule localization long-chain fatty acid transport cholesterol transport sterol transport organic hydroxy compound transport system process digestion intestinal absorption digestive system process positive regulation of response to biotic stimulus pattern recognition receptor signaling pathway toll-like receptor signaling pathway regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response regulation of toll-like receptor signaling pathway activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response response to external biotic stimulus regulation of signaling positive regulation of innate immune response defense response defense response to symbiont immune system process regulation of cell communication intestinal lipid absorption intestinal cholesterol absorption lipid digestion cellular response to lipoteichoic acid response to oxygen-containing compound response to lipoteichoic acid cellular response to molecule of bacterial origin cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium response to molecule of bacterial origin import into cell lipid import into cell long-chain fatty acid import into cell regulation of body fluid levels positive regulation of coagulation positive regulation of blood coagulation regulation of response to wounding regulation of coagulation coagulation regulation of multicellular organismal process positive regulation of hemostasis regulation of biological quality response to wounding regulation of hemostasis positive regulation of response to wounding wound healing regulation of blood coagulation hemostasis blood coagulation positive regulation of wound healing regulation of wound healing positive regulation of multicellular organismal process regulation of immune effector process positive regulation of macromolecule biosynthetic process positive regulation of myeloid leukocyte cytokine production involved in immune response cytokine production regulation of cytokine production positive regulation of immune effector process positive regulation of macromolecule metabolic process myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response regulation of cytokine production involved in immune response regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process immune effector process regulation of gene expression regulation of macrophage cytokine production positive regulation of gene expression positive regulation of cytokine production involved in immune response positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response positive regulation of cytokine production positive regulation of macrophage cytokine production macrophage cytokine production negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process phagocytosis apoptotic cell clearance endocytosis vesicle-mediated transport plasma lipoprotein particle clearance oxidised low-density lipoprotein particle clearance regulation of plasma lipoprotein particle levels phagocytosis, recognition cell recognition production of molecular mediator involved in inflammatory response inflammatory response positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of signaling immune response-regulating cell surface receptor signaling pathway cell surface toll-like receptor signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response-activating cell surface receptor signaling pathway regulation of toll-like receptor 4 signaling pathway positive regulation of toll-like receptor 4 signaling pathway innate immune response activating cell surface receptor signaling pathway cell surface pattern recognition receptor signaling pathway cell surface receptor signaling pathway toll-like receptor 4 signaling pathway cellular response to oxidative stress cellular response to chemical stress response to oxidative stress cellular response to stress response to hydroperoxide cellular response to hydroperoxide positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade lipoprotein particle mediated signaling low-density lipoprotein particle mediated signaling sensory perception of chemical stimulus sensory perception nervous system process sensory perception of taste cellular response to bacterial lipoprotein response to diacyl bacterial lipopeptide cellular response to diacyl bacterial lipopeptide response to bacterial lipoprotein response to bacterial lipopeptide cellular response to bacterial lipopeptide cellular component organization protein metabolic process cellular component organization or biogenesis supramolecular fiber organization amyloid fibril formation multicellular organismal-level homeostasis homeostatic process energy homeostasis regulation of action potential action potential regulation of membrane potential developmental process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process blood microparticle formation positive regulation of developmental process anatomical structure morphogenesis regulation of blood microparticle formation anatomical structure formation involved in morphogenesis anatomical structure development positive regulation of blood microparticle formation regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production cellular developmental process macrophage derived foam cell differentiation regulation of cell differentiation foam cell differentiation positive regulation of cell differentiation cell differentiation regulation of macrophage derived foam cell differentiation positive regulation of macrophage derived foam cell differentiation response to stilbenoid fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process organic acid metabolic process lipid metabolic process regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly cellular component biogenesis cellular component assembly inflammasome-mediated signaling pathway canonical inflammasome complex assembly positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway NLRP3 inflammasome complex assembly cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly protein-containing complex assembly protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis reactive oxygen species biosynthetic process positive regulation of reactive oxygen species biosynthetic process reactive oxygen species metabolic process regulation of reactive oxygen species biosynthetic process positive regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process response to lipid response to fatty acid angiogenesis regulation of vasculature development multicellular organism development tube morphogenesis regulation of anatomical structure morphogenesis system development blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis negative regulation of multicellular organismal process negative regulation of gene expression regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production cellular response to nitrogen compound response to nitrogen compound cellular response to amyloid-beta response to amyloid-beta acylglycerol transport triglyceride transport negative regulation of protein transport regulation of localization establishment of protein localization cellular localization negative regulation of nucleocytoplasmic transport nucleocytoplasmic transport regulation of protein localization nuclear transport negative regulation of intracellular protein transport regulation of protein localization to nucleus negative regulation of transport negative regulation of protein import into nucleus intercellular transport import into nucleus regulation of protein import into nucleus establishment of localization in cell protein import into nucleus intracellular protein localization regulation of intracellular transport negative regulation of protein localization negative regulation of intracellular transport regulation of transport regulation of establishment of protein localization negative regulation of establishment of protein localization intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport negative regulation of protein localization to nucleus establishment of protein localization to organelle protein transport regulation of cellular localization protein localization to organelle regulation of intracellular protein transport intracellular protein transport membrane organization phagocytosis, engulfment membrane invagination plasma membrane invagination receptor internalization receptor-mediated endocytosis vascular transport circulatory system process vascular process in circulatory system lipid transport across blood-brain barrier transport across blood-brain barrier interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production lipoprotein transport lipoprotein localization nitric oxide mediated signal transduction nitric oxide-cGMP-mediated signaling cholesterol import response to linoleic acid positive regulation of cytosolic calcium ion concentration detoxification regulation of cellular response to stress regulation of cellular response to oxidative stress response to superoxide cellular oxidant detoxification cellular response to oxygen radical cellular response to reactive oxygen species regulation of response to oxidative stress cellular detoxification regulation of superoxide metabolic process response to reactive oxygen species regulation of removal of superoxide radicals response to toxic substance superoxide metabolic process removal of superoxide radicals regulation of response to reactive oxygen species cellular response to superoxide cellular response to toxic substance response to oxygen radical positive regulation of membrane invagination positive regulation of endocytosis regulation of phagocytosis, engulfment regulation of endocytosis regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport positive regulation of phagocytosis, engulfment regulation of membrane invagination interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production cellular response to lipopolysaccharide response to lipopolysaccharide cellular response to lipid regulation of lipopolysaccharide-mediated signaling pathway lipopolysaccharide-mediated signaling pathway cholesterol storage lipid storage positive regulation of lipid localization regulation of lipid storage regulation of lipid localization positive regulation of cholesterol storage nutrient storage regulation of cholesterol storage positive regulation of lipid storage adaptive thermogenesis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis carboxylic acid transmembrane transport fatty acid transmembrane transport import across plasma membrane transmembrane transport long-chain fatty acid import across plasma membrane short-chain fatty acid transport low-density lipoprotein particle clearance defense response to Gram-positive bacterium defense response to bacterium	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule protein-containing complex signaling receptor complex cell surface membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola phagocytic vesicle endocytic vesicle platelet alpha granule membrane platelet alpha granule brush border membrane cluster of actin-based cell projections plasma membrane bounded cell projection brush border cell projection apical part of cell apical plasma membrane cell projection membrane external side of plasma membrane side of membrane endocytic vesicle membrane Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR008602	Duffy-antigen binding domain	Domain
B	IPR004258	Duffy-binding-like domain	Domain
B	IPR044932	Plasmodium falciparum erythrocyte membrane protein 1, acidic terminal segment superfamily	Homologous Superfamily
B	IPR042202	Duffy-antigen binding superfamily	Homologous Superfamily
B	IPR029211	Plasmodium falciparum erythrocyte membrane protein 1, acidic terminal segment	Domain
B	IPR029210	Plasmodium falciparum erythrocyte membrane protein-1, N-terminal segment	Domain
B	IPR041480	Cysteine-rich interdomain region 1 gamma	Domain
B	IPR054595	Duffy-binding-like domain, C-terminal subdomain	Domain
A	IPR002159	CD36 family	Family
A	IPR005428	CD36/scavenger receptor class B member 1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P16671	platelet-type bleeding disorder 10 malaria dilated cardiomyopathy Insulin Resistance primary immunodeficiency disease glucose intolerance hypertensive disorder allergic contact dermatitis ductal breast carcinoma in situ psoriasis head and neck cancer staphylococcal infection IgA glomerulonephritis tuberculosis adenoma platelet-type bleeding disorder 10 malaria dilated cardiomyopathy Insulin Resistance primary immunodeficiency disease glucose intolerance hypertensive disorder allergic contact dermatitis ductal breast carcinoma in situ psoriasis head and neck cancer staphylococcal infection IgA glomerulonephritis tuberculosis adenoma ischemia reperfusion injury lung adenocarcinoma B-cell chronic lymphocytic leukemia malignant pancreatic neoplasm breast fibroadenoma non-small cell lung carcinoma ovarian cancer cystic fibrosis pancreatic intraductal papillary-mucinous neoplasm dilated cardiomyopathy 1A pneumonia exocrine pancreatic carcinoma hereditary spastic paraplegia inborn carbohydrate metabolic disorder type 2 diabetes mellitus adrenal cortex carcinoma juvenile dermatomyositis asthma lung cancer malignant colon neoplasm breast cancer MALT lymphoma congenital anemia obesity disorder coronary heart disease, susceptibility to, 7 pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia rheumatoid arthritis staphylococcus aureus infection inherited lipid metabolism disorder invasive ductal breast carcinoma atherosclerosis lung carcinoma malignant ependymoma breast carcinoma myocardial ischemia coronary artery disease osteosarcoma cutaneous lupus erythematosus pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.