5LFV | pdb_00005lfv

Crystal structure of glycosylated Myelin-associated glycoprotein (MAG) Ig1-3 with soaked trisaccharide ligand

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PG_binding_1	e5lfvA1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: PG_binding_1	ECOD (develop294)
B	PG_binding_1	e5lfvB1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: PG_binding_1	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13927	Immunoglobulin domain (Ig_3)	Immunoglobulin domain	This family contains immunoglobulin-like domains.	Domain
A, B	PF08205	CD80-like C2-set immunoglobulin domain (C2-set_2)	CD80-like C2-set immunoglobulin domain	These domains belong to the immunoglobulin superfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Myelin-associated glycoprotein	sialic acid binding organic acid binding binding ion binding anion binding carboxylic acid binding carbohydrate derivative binding small molecule binding protein binding signaling receptor binding ganglioside GT1b binding ceramide binding sphingolipid binding glycolipid binding sialic acid binding organic acid binding binding ion binding anion binding carboxylic acid binding carbohydrate derivative binding small molecule binding protein binding signaling receptor binding ganglioside GT1b binding ceramide binding sphingolipid binding glycolipid binding glycosphingolipid binding ganglioside binding lipid binding carbohydrate binding identical protein binding protein homodimerization activity protein dimerization activity kinase binding enzyme binding protein kinase binding	multicellular organismal process cellular developmental process cellular component assembly involved in morphogenesis cell development glial cell development myelin assembly cellular component organization cellular component biogenesis multicellular organism development neurogenesis cellular anatomical entity morphogenesis cellular component assembly gliogenesis axon ensheathment ensheathment of neurons multicellular organismal process cellular developmental process cellular component assembly involved in morphogenesis cell development glial cell development myelin assembly cellular component organization cellular component biogenesis multicellular organism development neurogenesis cellular anatomical entity morphogenesis cellular component assembly gliogenesis axon ensheathment ensheathment of neurons cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process oligodendrocyte development central nervous system myelination nervous system development central nervous system myelin formation myelination anatomical structure morphogenesis axon ensheathment in central nervous system central nervous system development oligodendrocyte differentiation glial cell differentiation anatomical structure formation involved in morphogenesis cellular process regulation of cellular process regulation of developmental process negative regulation of biological process regulation of cell differentiation neuron differentiation negative regulation of cellular process negative regulation of cell differentiation regulation of biological process negative regulation of developmental process biological regulation generation of neurons negative regulation of neuron differentiation regulation of neuron differentiation axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection organization regulation of neurogenesis neuron projection development regulation of cell development cell projection morphogenesis negative regulation of growth neuron projection morphogenesis regulation of biological quality negative regulation of cellular component organization regulation of cell projection organization negative regulation of cell growth developmental growth involved in morphogenesis negative regulation of axonogenesis negative regulation of developmental growth negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization plasma membrane bounded cell projection morphogenesis cell growth cell morphogenesis regulation of axon extension regulation of nervous system development negative regulation of neurogenesis regulation of extent of cell growth regulation of axonogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of cell size neuron projection extension regulation of multicellular organismal development regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth growth negative regulation of axon extension axon development regulation of cell growth cell morphogenesis involved in neuron differentiation negative regulation of neuron projection development negative regulation of cell development neuron development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of neuron apoptotic process system process regulation of myelination regulation of system process positive regulation of biological process positive regulation of myelination positive regulation of nervous system process positive regulation of cellular process nervous system process regulation of nervous system process positive regulation of multicellular organismal process transmission of nerve impulse cell communication cellular response to stimulus response to stimulus response to mechanical stimulus response to external stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus cell adhesion regeneration response to axon injury neuron projection regeneration axon regeneration cellular response to stress response to stress response to wounding positive regulation of nervous system development astrocyte differentiation regulation of gliogenesis regulation of astrocyte differentiation positive regulation of gliogenesis positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of astrocyte differentiation positive regulation of cell development regulation of glial cell differentiation positive regulation of glial cell differentiation	cellular anatomical structure myelin sheath axon cell projection paranode region of axon main axon neuron projection plasma membrane bounded cell projection compact myelin myelin sheath adaxonal region cell periphery plasma membrane membrane membrane microdomain cellular anatomical structure myelin sheath axon cell projection paranode region of axon main axon neuron projection plasma membrane bounded cell projection compact myelin myelin sheath adaxonal region cell periphery plasma membrane membrane membrane microdomain membrane raft mesaxon ensheathing process Schmidt-Lanterman incisure

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, B	IPR003598	Immunoglobulin subtype 2	Domain
A, B	IPR003599	Immunoglobulin domain subtype	Domain
A, B	IPR051036	Sialic acid-binding Ig-like lectin	Family
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR013162	CD80-like, immunoglobulin C2-set	Domain
A, B	IPR007110	Immunoglobulin-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.