5LAK | pdb_00005lak

Ligand-bound structure of Cavally Virus 3CL Protease

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CN_hydrolase	e5lakD1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: Carbon-nitrogen hydrolase	T: Carbon-nitrogen hydrolase	F: CN_hydrolase	ECOD (v294.1)
C	CN_hydrolase	e5lakC1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: Carbon-nitrogen hydrolase	T: Carbon-nitrogen hydrolase	F: CN_hydrolase	ECOD (v294.1)
B	CN_hydrolase	e5lakB1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: Carbon-nitrogen hydrolase	T: Carbon-nitrogen hydrolase	F: CN_hydrolase	ECOD (v294.1)
A	CN_hydrolase	e5lakA1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: Carbon-nitrogen hydrolase	T: Carbon-nitrogen hydrolase	F: CN_hydrolase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF17222	Viral cysteine endopeptidase C107 (Peptidase_C107)	Viral cysteine endopeptidase C107	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth I], F [auth J], G [auth K]	BEZ-TYR-TYR-ASN-ECC Peptide inhibitor	-	-	-
A, B, C, D	3Cl Protease	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA methyltransferase activity O-methyltransferase activity methyltransferase cap1 activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity mRNA methyltransferase activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups nucleic acid conformation isomerase activity isomerase activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity 3'-5'-RNA exonuclease activity RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription termination site sequence-specific DNA binding nucleic acid binding transcription regulatory region nucleic acid binding ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process macromolecule metabolic process termination of RNA polymerase II transcription proteolysis protein metabolic process	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR046438	Nidovirus 2-O-methyltransferase	Domain
A, B, C, D	IPR045055	DNA2/NAM7-like helicase	Family
A, B, C, D	IPR033777	Viral cysteine endopeptidase C107	Family
A, B, C, D	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, D	IPR041679	DNA2/NAM7 helicase-like, C-terminal	Domain
A, B, C, D	IPR046436	Nidovirus 3'-5' exoribonuclease domain	Domain
A, B, C, D	IPR038599	LAP1C-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR047187	Upf1-like, C-terminal helicase domain	Domain
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.