5L9T

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B Superfamilygalactose-binding domain-like8037020 3000087 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyWD40 repeat-like8106390 3001694 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRING/U-box like8082719 3000160 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTPR-like8057064 3001345 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTPR-like8057064 3001345 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAnaphase-promoting complex subunit 16-like8053719 3002218 SCOP2B (2022-06-29)
T [auth W]SCOP2B SuperfamilyCDC26-like8053843 3002235 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCDC26-like8053843 3002235 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyWD40 repeat-like8106386 3001694 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyWD40 repeat-like8106386 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG1858_3rde5l9tA4 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG1858_3rdECOD (1.6)
AANAPC1e5l9tA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC1ECOD (1.6)
AKOG1858_2nde5l9tA3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
AKOG1858_1ste5l9tA2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 first helical domain (From Topology)T: Anaphase-promoting complex subunit 1 first helical domainF: KOG1858_1stECOD (1.6)
AKOG1858_4the5l9tA5 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 second helical domain (From Topology)T: Anaphase-promoting complex subunit 1 second helical domainF: KOG1858_4thECOD (1.6)
LANAPC10e5l9tL1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: ANAPC10ECOD (1.6)
NCullin_4the5l9tN4 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_4thECOD (1.6)
NCullin_2nde5l9tN3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_2ndECOD (1.6)
NKOG2165e5l9tN1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2165ECOD (1.6)
NCullin_3rde5l9tN2 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: Cullin_3rdECOD (1.6)
OApc5_Ne5l9tO2 A: alpha arraysX: SHQ1 C-terminal domain-likeH: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology)T: Anaphase-promoting complex subunit 5 N-terminal domainF: Apc5_NECOD (1.6)
OANAPC5e5l9tO1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC5ECOD (1.6)
Q [auth R]ANAPC4_WD40_1e5l9tR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_1ECOD (1.6)
R [auth S]ubiquitin_1e5l9tS1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
S [auth T]UQ_cone5l9tT1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
U [auth X]TPR_19,ANAPC8_1e5l9tX1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_19,ANAPC8_1ECOD (1.6)
V [auth Y]TPR_19,ANAPC8_1e5l9tY1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_19,ANAPC8_1ECOD (1.6)
Bzf-rbx1e5l9tB1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-rbx1ECOD (1.6)
CKOG1155,ANAPC8e5l9tC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1155,ANAPC8ECOD (1.6)
PANAPC8e5l9tP1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC8ECOD (1.6)
FTPR_11_7e5l9tF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
HTPR_11_7e5l9tH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
IANAPC4_WD40e5l9tI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40ECOD (1.6)
IANAPC4e5l9tI2 A: alpha bundlesX: Four-helical up-and-down bundleH: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology)T: Helical bundle domain in anaphase-promoting complex subunit 4F: ANAPC4ECOD (1.6)
JTPR_11_7e5l9tJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
KTPR_11_7e5l9tK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF20518Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN)Anaphase-promoting complex subunit 1 middle domain- Repeat
PF21282APC1 beta sandwich domain (APC1_3rd)APC1 beta sandwich domainThis domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ...This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle.
Domain
PF03256Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10)Anaphase-promoting complex, subunit 10 (APC10)- Family
PF05839Apc13p protein (Apc13p)Apc13p protein- Family
PF12862Anaphase-promoting complex subunit 5 (ANAPC5)Anaphase-promoting complex subunit 5- Repeat
PF21371Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N)Anaphase-promoting complex subunit 5, N-terminal domainThis domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ...This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. This domain has an alpha-helical fold [1-4]. It is normally found in association with Pfam:PF12862.
Domain
Q [auth R]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
Q [auth R]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth S]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
S [auth T]PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain
U [auth X],
V [auth Y]
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
PF12861Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11)Anaphase-promoting complex subunit 11 RING-H2 finger- Family
C, P
PF04049Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8)Anaphase promoting complex subunit 8 / Cdc23- Repeat
PF15243Anaphase-promoting complex subunit 15 (ANAPC15)Anaphase-promoting complex subunit 15- Family
PF17256Anaphase-promoting complex, subunit 16 (ANAPC16)Anaphase-promoting complex, subunit 16- Family
F, H
PF12895Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)Anaphase-promoting complex, cyclosome, subunit 3- Repeat
F, H
PF00515Tetratricopeptide repeat (TPR_1)Tetratricopeptide repeat- Repeat
G,
T [auth W]
PF10471Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26)Anaphase-promoting complex APC subunit CDC26- Family
PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
J, K
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Anaphase-promoting complex subunit 1
Anaphase-promoting complex subunit 10-
Anaphase-promoting complex subunit 13-
Anaphase-promoting complex subunit 2
Anaphase-promoting complex subunit 5
Q [auth R]Fizzy-related protein homolog
R [auth S]Ubiquitin_variant-Hsl1(substrate) fusion
S [auth T]Ubiquitin-conjugating enzyme E2 S
U [auth X],
V [auth Y]
Anaphase-promoting complex subunit 7
Anaphase-promoting complex subunit 11
C, P
Cell division cycle protein 23 homolog
Anaphase-promoting complex subunit 15-
Anaphase-promoting complex subunit 16-
F, H
Cell division cycle protein 27 homolog
G,
T [auth W]
Anaphase-promoting complex subunit CDC26-
Anaphase-promoting complex subunit 4
J, K
Cell division cycle protein 16 homolog-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR041221Anaphase-promoting complex subunit 1, C-terminalDomain
IPR046794Anaphase-promoting complex subunit 1, middle domainDomain
IPR024990Anaphase-promoting complex subunit 1Family
IPR048971Anaphase-promoting complex subunit 1, beta-sandwich domainDomain
IPR049255Anaphase-promoting complex subunit 1, N-terminal domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR016901Anaphase-promoting complex subunit APC10/Doc1Family
IPR004939APC10/DOC domainDomain
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR008401Apc13Family
IPR014786Anaphase-promoting complex subunit 2, C-terminalDomain
IPR016158Cullin homology domainDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR036317Cullin homology domain superfamilyHomologous Superfamily
IPR044554Anaphase-promoting complex subunit 2Family
IPR001373Cullin, N-terminalDomain
IPR026000Anaphase-promoting complex subunit 5 domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR037679Anaphase-promoting complex subunit 5Family
IPR019734Tetratricopeptide repeatRepeat
IPR048968Anaphase-promoting complex subunit 5, N-terminal domainDomain
Q [auth R]IPR019775WD40 repeat, conserved siteConserved Site
Q [auth R]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth R]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
Q [auth R]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Q [auth R]IPR001680WD40 repeatRepeat
Q [auth R]IPR033010WD repeat Cdc20/FizzyFamily
R [auth S]IPR019954Ubiquitin conserved siteConserved Site
R [auth S]IPR000626Ubiquitin-like domainDomain
R [auth S]IPR019956Ubiquitin domainDomain
R [auth S]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
R [auth S]IPR017441Protein kinase, ATP binding siteBinding Site
R [auth S]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
R [auth S]IPR000719Protein kinase domainDomain
R [auth S]IPR008271Serine/threonine-protein kinase, active siteActive Site
S [auth T]IPR000608Ubiquitin-conjugating enzyme E2Domain
S [auth T]IPR016135Ubiquitin-conjugating enzyme/RWD-likeHomologous Superfamily
S [auth T]IPR023313Ubiquitin-conjugating enzyme, active siteActive Site
U [auth X],
V [auth Y]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
U [auth X],
V [auth Y]
IPR019734Tetratricopeptide repeatRepeat
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR024991Anaphase-promoting complex subunit 11, RING-H2 fingerDomain
IPR001841Zinc finger, RING-typeDomain
C, P
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C, P
IPR007192Cdc23Domain
C, P
IPR019734Tetratricopeptide repeatRepeat
IPR026182Anaphase-promoting complex subunit 15Family
IPR029641Anaphase-promoting complex subunit 16Family
F, H
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
F, H
IPR001440TPR_1Unknown
F, H
IPR019734Tetratricopeptide repeatRepeat
G,
T [auth W]
IPR018860Anaphase-promoting complex, subunit CDC26Family
IPR017169Anaphase-promoting complex subunit 4, metazoaFamily
IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR024789Anaphase-promoting complex subunit 4Family
IPR024790Anaphase-promoting complex subunit 4, long domainDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
J, K
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
J, K
IPR019734Tetratricopeptide repeatRepeat

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9H1A4
PharosQ9UM13
PharosQ9BS18
PharosQ9UJX6
PharosQ9UJX4
Q [auth R]PharosQ9UM11
R [auth S]PharosP0CG47
S [auth T]PharosQ16763
U [auth X],
V [auth Y]
PharosQ9UJX3
PharosQ9NYG5
C, P
PharosQ9UJX2
PharosP60006
PharosQ96DE5
F, H
PharosP30260
G,
T [auth W]
PharosQ8NHZ8
PharosQ9UJX5
J, K
PharosQ13042