5L8F | pdb_00005l8f

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A, E62A, H65A.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d5l8fj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
I	d5l8fi1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
I	d5l8fi2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
H	d5l8fh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
G	d5l8fg1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
G	d5l8fg2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
F	d5l8ff_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
E	d5l8fe_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
D	d5l8fd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
C	d5l8fc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
B	d5l8fb1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
B	d5l8fb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)
A	d5l8fa_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ATCC 11170 ) [TaxId: 269796 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J		e5l8fJ1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
I		e5l8fI1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
H		e5l8fH1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
G		e5l8fG1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
F		e5l8fF1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
E		e5l8fE1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
D		e5l8fD1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
C		e5l8fC1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
B		e5l8fB1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)
A		e5l8fA1	A: alpha bundles	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Rru_A0973	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR030907	Encapsulin-associated ferritin-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR054581	Encapsulated ferritin-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.