5L8B | pdb_00005l8b

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E62A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
Z	d5l8bz_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Y	d5l8by_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
X	d5l8bx_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
W	d5l8bw_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
V	d5l8bv_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5l8bu1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5l8bu2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d5l8bt_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d5l8bs1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d5l8bs2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
R	d5l8br1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
R	d5l8br2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Q	d5l8bq1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Q	d5l8bq2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d5l8bp_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
O	d5l8bo1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
O	d5l8bo2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d5l8bn_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
M	d5l8bm_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d5l8bl_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d5l8bk_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d5l8bj1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d5l8bj2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d5l8bi1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d5l8bi2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d5l8bh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d5l8bg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d5l8bf_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d5l8be1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d5l8be2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d5l8bd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
C	d5l8bc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
B	d5l8bb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d5l8ba_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	ferrit_encaps	e5l8bZ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Y	ferrit_encaps	e5l8bY1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
X	ferrit_encaps	e5l8bX1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
W	ferrit_encaps	e5l8bW1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
V	ferrit_encaps	e5l8bV1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
U	ferrit_encaps	e5l8bU1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
T	ferrit_encaps	e5l8bT1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
S	ferrit_encaps	e5l8bS1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
R	ferrit_encaps	e5l8bR1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Q	ferrit_encaps	e5l8bQ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
P	ferrit_encaps	e5l8bP1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
O	ferrit_encaps	e5l8bO1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
N	ferrit_encaps	e5l8bN1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
M	ferrit_encaps	e5l8bM1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
L	ferrit_encaps	e5l8bL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
K	ferrit_encaps	e5l8bK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
J	ferrit_encaps	e5l8bJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
I	ferrit_encaps	e5l8bI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
H	ferrit_encaps	e5l8bH1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
G	ferrit_encaps	e5l8bG1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
F	ferrit_encaps	e5l8bF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
E	ferrit_encaps	e5l8bE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
DA [auth d]	ferrit_encaps	e5l8bd1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
D	ferrit_encaps	e5l8bD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
CA [auth c]	ferrit_encaps	e5l8bc1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
C	ferrit_encaps	e5l8bC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
BA [auth b]	ferrit_encaps	e5l8bb1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
B	ferrit_encaps	e5l8bB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
AA [auth a]	ferrit_encaps	e5l8ba1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
A	ferrit_encaps	e5l8bA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
Z	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Y	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
X	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
W	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
V	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
U	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
T	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
S	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
R	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Q	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
P	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
O	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
N	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
M	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
L	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
K	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
DA [auth d]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
CA [auth c]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
BA [auth b]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
AA [auth a]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Uncharacterized protein	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR030907	Encapsulin-associated ferritin-like	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR054581	Encapsulated ferritin-like	Family