5L89 | pdb_00005l89

Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
Z	d5l89z_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Y	d5l89y_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
X	d5l89x_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
W	d5l89w_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
V	d5l89v_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5l89u1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5l89u2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d5l89t1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d5l89t2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d5l89s_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
R	d5l89r_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Q	d5l89q_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d5l89p1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d5l89p2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
O	d5l89o_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d5l89n1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d5l89n2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
M	d5l89m_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d5l89l1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d5l89l2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d5l89k_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d5l89j_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d5l89i_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d5l89h1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d5l89h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d5l89g1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d5l89g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d5l89f1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d5l89f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d5l89e_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d5l89d1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d5l89d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
C	d5l89c_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
B	d5l89b_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d5l89a1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d5l89a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	ferrit_encaps	e5l89Z1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Y	ferrit_encaps	e5l89Y1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
X	ferrit_encaps	e5l89X1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
W	ferrit_encaps	e5l89W1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
V	ferrit_encaps	e5l89V1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
U	ferrit_encaps	e5l89U1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
T	ferrit_encaps	e5l89T1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
S	ferrit_encaps	e5l89S1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
R	ferrit_encaps	e5l89R1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Q	ferrit_encaps	e5l89Q1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
P	ferrit_encaps	e5l89P1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
O	ferrit_encaps	e5l89O1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
N	ferrit_encaps	e5l89N1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
M	ferrit_encaps	e5l89M1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
L	ferrit_encaps	e5l89L1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
K	ferrit_encaps	e5l89K1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
J	ferrit_encaps	e5l89J1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
I	ferrit_encaps	e5l89I1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
H	ferrit_encaps	e5l89H1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
G	ferrit_encaps	e5l89G1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
F	ferrit_encaps	e5l89F1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
E	ferrit_encaps	e5l89E1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
DA [auth d]	ferrit_encaps	e5l89d1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
D	ferrit_encaps	e5l89D1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
CA [auth c]	ferrit_encaps	e5l89c1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
C	ferrit_encaps	e5l89C1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
BA [auth b]	ferrit_encaps	e5l89b1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
B	ferrit_encaps	e5l89B1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
AA [auth a]	ferrit_encaps	e5l89a1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
A	ferrit_encaps	e5l89A1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
Z	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Y	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
X	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
W	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
V	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
U	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
T	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
S	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
R	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Q	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
P	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
O	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
N	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
M	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
L	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
K	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
DA [auth d]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
CA [auth c]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
BA [auth b]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
AA [auth a]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Rru_A0973	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR030907	Encapsulin-associated ferritin-like	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR054581	Encapsulated ferritin-like	Family