5KOV
Crystal structure of the human astrovirus 2 capsid protein spike in complex with a single chain variable fragment of an astrovirus neutralizing antibody at 3.24-A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
I [auth N] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
L [auth M] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
P [auth T] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
M [auth S] | SCOP2B Superfamily | Norovirus P2 domain-like | 8093102 | 3002678 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12226 | e5kovA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
E [auth H] | PF12226 | e5kovH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
I [auth N] | PF12226 | e5kovN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
L [auth M] | PF12226 | e5kovM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
P [auth T] | PF12226 | e5kovT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
D [auth B] | PF12226 | e5kovB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
H [auth G] | PF12226 | e5kovG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
M [auth S] | PF12226 | e5kovS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF12226 | ECOD (1.6) |
B [auth C] | PF07686 | e5kovC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth E] | PF07686 | e5kovE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth I] | PF07686 | e5kovI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth Q] | PF07686 | e5kovQ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
N [auth W] | PF07686 | e5kovW1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
O [auth U] | PF07686 | e5kovU2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth K] | PF07686 | e5kovK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth O] | PF07686 | e5kovO2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
O [auth U] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F [auth K] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
K [auth O] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12226 | Turkey astrovirus capsid protein (Astro_capsid_p) | Turkey astrovirus capsid protein | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004337 | Astrovirus capsid protein, inner core domain | Domain | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR022027 | Turkey astrovirus capsid protein | Family |