5KNN

Evolutionary gain of alanine mischarging to non-cognate tRNAs with a G4:U69 base pair

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF01411	e5knnC1	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
C	PF01411	e5knnC2	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
D	PF01411	e5knnD2	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
D	PF01411	e5knnD1	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
A	PF01411	e5knnA2	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
A	PF01411	e5knnA1	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
B	PF01411	e5knnB1	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
B	PF01411	e5knnB2	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
E	PF01411	e5knnE1	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
E	PF01411	e5knnE2	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
F	PF01411	e5knnF1	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
F	PF01411	e5knnF2	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
G	PF01411	e5knnG2	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
G	PF01411	e5knnG1	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)
H	PF01411	e5knnH1	A: alpha complex topology	X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) (From Topology)	T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	F: PF01411	ECOD (1.6)
H	PF01411	e5knnH2	A: a+b three layers	X: Class II aaRS and biotin synthetases (From Topology)	H: Class II aaRS and biotin synthetases (From Topology)	T: Class II aaRS and biotin synthetases	F: PF01411	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
D	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
A	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
B	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
E	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
F	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
G	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)
H	3.30.930.10	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01411	tRNA synthetases class II (A) (tRNA-synt_2c)	tRNA synthetases class II (A)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Alanine--tRNA ligase, cytoplasmic	binding amino acid binding RNA binding organic cyclic compound binding tRNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding binding amino acid binding RNA binding organic cyclic compound binding tRNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding Ser-tRNA(Ala) hydrolase activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid carboxylic ester hydrolase activity aminoacyl-tRNA editing activity hydrolase activity catalytic activity, acting on a tRNA catalytic activity ligase activity, forming carbon-oxygen bonds alanine-tRNA ligase activity aminoacyl-tRNA ligase activity ligase activity cation binding transition metal ion binding zinc ion binding metal ion binding	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process biosynthetic process tRNA processing ncRNA metabolic process organic substance biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process biosynthetic process tRNA processing ncRNA metabolic process organic substance biosynthetic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA processing amino acid activation tRNA aminoacylation organonitrogen compound biosynthetic process amino acid metabolic process protein metabolic process organonitrogen compound metabolic process translation tRNA aminoacylation for protein translation multicellular organismal process system process nervous system process neuromuscular process neuromuscular process controlling balance regulation of biological process neuron apoptotic process regulation of cellular process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process developmental process head development animal organ development brain development nervous system development cerebellar cortex development multicellular organism development cerebellar Purkinje cell layer development cerebellum development central nervous system development metencephalon development anatomical structure development hindbrain development system development tRNA modification RNA modification macromolecule modification alanyl-tRNA aminoacylation regulation of cytoplasmic translational fidelity regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of translational elongation regulation of biological quality regulation of biosynthetic process regulation of protein metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of cytoplasmic translational elongation regulation of gene expression regulation of translation translational elongation cytoplasmic translation regulation of macromolecule biosynthetic process cytoplasmic translational elongation regulation of translational fidelity regulation of metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR045864	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018164	Alanyl-tRNA synthetase, class IIc, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018162	Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012947	Threonyl/alanyl tRNA synthetase, SAD	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023033	Alanine-tRNA ligase, eukaryota/bacteria	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003156	DHHA1 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002318	Alanine-tRNA ligase, class IIc	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018163	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018165	Alanyl-tRNA synthetase, class IIc, core domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: P49588	Charcot-Marie-Tooth disease axonal type 2N developmental and epileptic encephalopathy, 29 Charcot-Marie-Tooth disease peripheral neuropathy astrocytic tumor epilepsy malignant mesothelioma ovarian cancer psoriasis Ataxias, Hereditary motor peripheral neuropathy peripheral nervous system disease Rubinstein-Taybi syndrome intellectual disability neurodegenerative disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.