Annotations: 5KE1

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03212,PF12951	e5ke1A2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: PF03212,PF12951	ECOD (1.6)
A	PF22364	e5ke1A1	A: beta duplicates or obligate multimers	X: VirG insertion domain (VID) (From Topology)	H: VirG insertion domain (VID) (From Topology)	T: VirG insertion domain (VID)	F: PF22364	ECOD (1.6)
B	PF03212,PF12951	e5ke1B1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: PF03212,PF12951	ECOD (1.6)
B	PF22364	e5ke1B2	A: beta duplicates or obligate multimers	X: VirG insertion domain (VID) (From Topology)	H: VirG insertion domain (VID) (From Topology)	T: VirG insertion domain (VID)	F: PF22364	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12951	Passenger-associated-transport-repeat (PATR)	Passenger-associated-transport-repeat	-	Repeat
A, B	PF18883	Autochaperone Domain Type 1 (AC_1)	Autochaperone Domain Type 1	-	Repeat
A, B	PF22364	VirG insertion domain (VID) (VID)	VirG insertion domain (VID)	Outer membrane autotransporter VirG/IcsA is a virulence factor from Shigella flexneri that acts as an adhesin and actin-polymerising factor during infection [1]. VirG/IcsA consists of three major domains: an atypical signal peptide at the N-terminal, ...	Outer membrane autotransporter VirG/IcsA is a virulence factor from Shigella flexneri that acts as an adhesin and actin-polymerising factor during infection [1]. VirG/IcsA consists of three major domains: an atypical signal peptide at the N-terminal, followed by the passenger domain (presented on the cell surface) and a beta-domain that anchors the protein to the bacterial outer membrane. This entry represents the insertion domain (VID) that appears to be inserted into a continuous sequence of beta-helical coils [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Outer membrane protein IcsA autotransporter	-	cell adhesion cellular process	cell tip cell pole cellular anatomical entity extracellular region cell surface periplasmic space cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036709	Autotransporter beta-domain superfamily	Homologous Superfamily
A, B	IPR013425	Autotransporter-associated beta strand repeat	Repeat
A, B	IPR005546	Autotransporter beta-domain	Domain
A, B	IPR006315	Outer membrane autotransporter barrel domain	Domain
A, B	IPR043990	Autochaperone domain type 1	Domain
A, B	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
A, B	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.