5K9Z | pdb_00005k9z

Crystal Structure of putative short-chain dehydrogenase/reductase from Burkholderia xenovorans LB400

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8063239	4000029	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8063240	3000038	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8063240	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8063240	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8063240	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RRM_1	e5k9zA1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: RRM_1	ECOD (v294.1)
B	RRM_1	e5k9zB1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: RRM_1	ECOD (v294.1)
C	RRM_1	e5k9zC1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: RRM_1	ECOD (v294.1)
D	RRM_1	e5k9zD1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: RRM_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13561	Enoyl-(Acyl carrier protein) reductase (adh_short_C2)	Enoyl-(Acyl carrier protein) reductase	This domain is found in Enoyl-(Acyl carrier protein) reductases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative short-chain dehydrogenase/reductase	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity	steroid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR045309	Xanthoxin dehydrogenase ABA2-like	Family
A, B, C, D	IPR002347	Short-chain dehydrogenase/reductase SDR	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.