5K5O
Structure of AspA-26mer DNA complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01978 | e5k5oA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01978 | ECOD (1.6) |
B | PF01978 | e5k5oB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01978 | ECOD (1.6) |
D | PF01978 | e5k5oD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01978 | ECOD (1.6) |
C | PF01978 | e5k5oC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01978 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
D | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01978 | Sugar-specific transcriptional regulator TrmB (TrmB) | Sugar-specific transcriptional regulator TrmB | One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter [2] in Thermococcus litoralis. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
AspA | - | - | ||
E [auth N] | DNA (26-MER) | - | - | - |
F [auth M] | DNA (26-MER) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001845 | HTH ArsR-type DNA-binding domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR011991 | ArsR-like helix-turn-helix domain | Domain | |
IPR002831 | Transcription regulator TrmB, N-terminal | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |