5K53 | pdb_00005k53

Crystal structures of aldehyde deformylating oxygenase from Oscillatoria sp. KNUA011

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5k53a_	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Oscillatoria sp. ) [TaxId: 1159 ],	SCOPe (2.08)
B	d5k53b_	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Oscillatoria sp. ) [TaxId: 1159 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8094883	3001658	SCOP2B (2022-06-29)
B	SCOP2 Family	PMT1231-like	8094882	4001284	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Ferritin-like	8094883	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Plug	e5k53A1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Plug	ECOD (v294.1)
B	PSD13_N	e5k53B1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: PSD13_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	aldehyde deformylating oxygenase	lyase activity catalytic activity aldehyde oxygenase (deformylating) activity carbon-carbon lyase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR022612	Long-chain fatty aldehyde decarbonylase	Family
A, B	IPR012347	Ferritin-like	Homologous Superfamily
A, B	IPR009078	Ferritin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.