5K52 | pdb_00005k52

Crystal structures of aldehyde deformylating oxygenase from Limnothrix sp. KNUA012

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5k52a1	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
A	d5k52a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
B	d5k52b1	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
B	d5k52b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
D	d5k52d1	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
D	d5k52d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
C	d5k52c1	All alpha proteins	Ferritin-like	Ferritin-like	PMT1231-like	automated matches	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)
C	d5k52c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Limnothrix sp. KNUA012 ) [TaxId: 1162714 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PMT1231-like	8086809	4001284	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8086810	3001658	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086810	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086810	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086810	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HRDC	e5k52A1	A: a/b three-layered sandwiches	X: Cytochrome P450	H: Cytochrome P450	T: Cytochrome P450	F: HRDC	ECOD (v294.1)
B	HRDC	e5k52B1	A: a/b three-layered sandwiches	X: Cytochrome P450	H: Cytochrome P450	T: Cytochrome P450	F: HRDC	ECOD (v294.1)
D	HRDC	e5k52D1	A: a/b three-layered sandwiches	X: Cytochrome P450	H: Cytochrome P450	T: Cytochrome P450	F: HRDC	ECOD (v294.1)
C	HRDC	e5k52C1	A: a/b three-layered sandwiches	X: Cytochrome P450	H: Cytochrome P450	T: Cytochrome P450	F: HRDC	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Aldehyde decarbonylase	lyase activity catalytic activity aldehyde oxygenase (deformylating) activity carbon-carbon lyase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR022612	Long-chain fatty aldehyde decarbonylase	Family
A, B, C, D	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D	IPR009078	Ferritin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.