5JZT | pdb_00005jzt

Cryo-EM structure of aerolysin pore in LMNG micelle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ge5jztG1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
Fe5jztF1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
Ee5jztE1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
De5jztD1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
Ce5jztC1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
Be5jztB1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)
Ae5jztA1 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT:F:ECOD (20:10:01)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR055267Aerolysin-like, C-terminalDomain
A, B, C, D, E
IPR005831Aerolysin/haemolysin toxin, conserved siteConserved Site
A, B, C, D, E
IPR005830AerolysinFamily
A, B, C, D, E
IPR005138Aerolysin/Pertussis toxin domainDomain
A, B, C, D, E
IPR016187C-type lectin foldHomologous Superfamily
A, B, C, D, E
IPR037015Aerolysin/Pertussis toxin (APT), N-terminal domain superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM