5JZH | pdb_00005jzh

Cryo-EM structure of aerolysin prepore


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ne5jzhN1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Me5jzhM1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Le5jzhL1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ke5jzhK1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Je5jzhJ1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ie5jzhI1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
He5jzhH1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ge5jzhG1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Fe5jzhF1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ee5jzhE1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
De5jzhD1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ce5jzhC1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Be5jzhB1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)
Ae5jzhA1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
N3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
N3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
M3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
M3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
L3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
L3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
K3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
K3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
J3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
J3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
I3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
I3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
H3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
H3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
G3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
G3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
F3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
F3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
E3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
E3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
D3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
D3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
C3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
C3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
B3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
B3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)
A3.10.40.10 Alpha Beta Roll Pertussis Toxin Chain B, domain 1CATH (4.3.0)
A3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin Chain A, domain 2CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR055267Aerolysin-like, C-terminalDomain
A, B, C, D, E
IPR005831Aerolysin/haemolysin toxin, conserved siteConserved Site
A, B, C, D, E
IPR005830AerolysinFamily
A, B, C, D, E
IPR005138Aerolysin/Pertussis toxin domainDomain
A, B, C, D, E
IPR016187C-type lectin foldHomologous Superfamily
A, B, C, D, E
IPR037015Aerolysin/Pertussis toxin (APT), N-terminal domain superfamilyHomologous Superfamily