5JYD | pdb_00005jyd

Crystal Structure of a Putative Short Chain Dehydrogenase from Burkholderia cenocepacia

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5jyda_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
B	d5jydb_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
C	d5jydc_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
D	d5jydd_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
E	d5jyde_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
F	d5jydf_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
G	d5jydg_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
H	d5jydh_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
B	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8063175	4000029	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SDR-like	8063176	3000038	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	SDR-like	8063176	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SRP54_N	e5jydA1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
B	SRP54_N	e5jydB1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
C	SRP54_N	e5jydC1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
D	SRP54_N	e5jydD1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
E	SRP54_N	e5jydE1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
F	SRP54_N	e5jydF1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
G	SRP54_N	e5jydG1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)
H	SRP54_N	e5jydH1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 9-bladed	F: SRP54_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Short chain dehydrogenase	oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.