5JXF | pdb_00005jxf

Crystal structure of Flavobacterium psychrophilum DPP11 in complex with dipeptide Arg-Asp

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Trypsin-like serine proteases	8060623	3000114	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trypsin-like serine proteases	8060623	3000114	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trypsin-like serine proteases	8060623	3000114	SCOP2B (2022-06-29)
A	SCOP2 Family	S46 peptidase-like	8060622	4004198	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Trypsin-like serine proteases	8060623	3000114	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Peptidase_S46_1st	e5jxfD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S46_1st	ECOD (1.6)
D	Peptidase_S46_2nd	e5jxfD2	A: alpha bundles	X: Helical bundle domain in S46 peptidase (From Topology)	H: Helical bundle domain in S46 peptidase (From Topology)	T: Helical bundle domain in S46 peptidase	F: Peptidase_S46_2nd	ECOD (1.6)
C	Peptidase_S46_1st	e5jxfC2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S46_1st	ECOD (1.6)
C	Peptidase_S46_2nd	e5jxfC1	A: alpha bundles	X: Helical bundle domain in S46 peptidase (From Topology)	H: Helical bundle domain in S46 peptidase (From Topology)	T: Helical bundle domain in S46 peptidase	F: Peptidase_S46_2nd	ECOD (1.6)
B	Peptidase_S46_1st	e5jxfB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S46_1st	ECOD (1.6)
B	Peptidase_S46_2nd	e5jxfB2	A: alpha bundles	X: Helical bundle domain in S46 peptidase (From Topology)	H: Helical bundle domain in S46 peptidase (From Topology)	T: Helical bundle domain in S46 peptidase	F: Peptidase_S46_2nd	ECOD (1.6)
A	Peptidase_S46_1st	e5jxfA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S46_1st	ECOD (1.6)
A	Peptidase_S46_2nd	e5jxfA1	A: alpha bundles	X: Helical bundle domain in S46 peptidase (From Topology)	H: Helical bundle domain in S46 peptidase (From Topology)	T: Helical bundle domain in S46 peptidase	F: Peptidase_S46_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF10459	Peptidase S46 (Peptidase_S46)	Peptidase S46	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Asp/Glu-specific dipeptidyl-peptidase	serine-type exopeptidase activity peptidase activity serine-type aminopeptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity aminopeptidase activity hydrolase activity exopeptidase activity catalytic activity dipeptidyl-peptidase activity	catabolic process metabolic process cellular process peptide metabolic process peptide catabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, B, C, D	IPR019500	Peptidase S46	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.