5JVN
C3-type pyruvate phosphate dikinase: intermediate state of the central domain in the swiveling mechanism
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5jvna3 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Phosphoenolpyruvate/pyruvate domain | automated matches | automated matches | (Flaveria pringlei ) [TaxId: 4226 ], | SCOPe (2.08) |
A | d5jvna2 | Alpha and beta proteins (a/b) | The 'swivelling' beta/beta/alpha domain | Phosphohistidine domain | automated matches | automated matches | (Flaveria pringlei ) [TaxId: 4226 ], | SCOPe (2.08) |
A | d5jvna1 | Alpha and beta proteins (a+b) | ATP-grasp | Glutathione synthetase ATP-binding domain-like | automated matches | automated matches | (Flaveria pringlei ) [TaxId: 4226 ], | SCOPe (2.08) |
A | d5jvna4 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Flaveria pringlei ) [TaxId: 4226 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01326 | e5jvnA3 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF01326 | ECOD (1.6) |
A | PF02896 | e5jvnA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02896 | ECOD (1.6) |
A | PF00391 | e5jvnA1 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PF00391 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01326 | Pyruvate phosphate dikinase, AMP/ATP-binding domain (PPDK_N) | Pyruvate phosphate dikinase, AMP/ATP-binding domain | - | Family | |
PF00391 | PEP-utilising enzyme, mobile domain (PEP-utilizers) | PEP-utilising enzyme, mobile domain | This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it. | Domain | |
PF02896 | PEP-utilising enzyme, PEP-binding domain (PEP-utilizers_C) | PEP-utilising enzyme, PEP-binding domain | This entry represents a TIM barrel domain found at the C terminus of a number of PEP (phosphoenolpyruvate)-utilising proteins. In PPDK (Pyruvate phosphate dikinase) this C-terminal domain has been shown to be a PEP-binding domain [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR008279 | PEP-utilising enzyme, mobile domain | Domain | |
IPR018274 | PEP-utilising enzyme, active site | Active Site | |
IPR010121 | Pyruvate, phosphate dikinase | Family | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR023151 | PEP-utilising enzyme, conserved site | Conserved Site | |
IPR036637 | Phosphohistidine domain superfamily | Homologous Superfamily | |
IPR002192 | Pyruvate phosphate dikinase, AMP/ATP-binding | Domain | |
IPR040442 | Pyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR000121 | PEP-utilising enzyme, C-terminal | Domain |