5JPV | pdb_00005jpv

Efficient targeting of the asialoglycoprotein receptor by polyvalent display of a compact galactoseamine mimic

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5jpvb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d5jpva_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	C-type lectin-like	8037067	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8037067	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Aminotran_3	e5jpvB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Aminotran_3	ECOD (v294.1)
A	Aminotran_3	e5jpvA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Aminotran_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Asialoglycoprotein receptor 1	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding asialoglycoprotein receptor activity cargo receptor activity fucose binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cation binding ion binding metal ion binding binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding asialoglycoprotein receptor activity cargo receptor activity fucose binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cation binding ion binding metal ion binding identical protein binding protein binding	response to stimulus immune response immune system process localization import into cell transport cellular process receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016187	C-type lectin fold	Homologous Superfamily
A, B	IPR033989	CD209-like, C-type lectin-like domain	Domain
A, B	IPR001304	C-type lectin-like	Domain
A, B	IPR018378	C-type lectin, conserved site	Conserved Site
A, B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B	IPR050111	C-type lectin and snaclec domain-containing protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P07306	glioblastoma malignant glioma large cell medulloblastoma osteosarcoma lung cancer tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.