5JOP | pdb_00005jop

Crystal structure of anti-glycan antibody Fab14.22 in complex with Streptococcus pneumoniae serotype 14 tetrasaccharide at 1.75 A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth L]	d5jopl2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C [auth L]	d5jopl1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A [auth D]	d5jopd2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A [auth D]	d5jopd1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth H]	TTL, ATPgrasp_YheCD	e5jopH1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
B [auth E]	TTL, ATPgrasp_YheCD	e5jopE1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
C [auth L]	TTL, ATPgrasp_YheCD	e5jopL1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
A [auth D]	TTL, ATPgrasp_YheCD	e5jopD1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Nucleic acid-binding protein	T: Chelatase-like	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B [auth E], D [auth H]	Fab14.22	FGF19	Homo sapiens (human)	IGHV1-3401, IGHV1-2201, IGHJ201, IGHJ401, IGHG2B*02	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202612-0)
A [auth D], C [auth L]	Fab14.22	L-KAPPA	Homo sapiens (human)	IGKV1-11701, IGKJ101, IGKJ201, IGKC01, IGKC*02	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202612-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B [auth E], D [auth H]	Heavy Chain	IGHV1	-	N-ACETYL-D-GLUCOSAMINE	SAbDab (2026-03-27)
A [auth D], C [auth L]	Light Chain	IGKV1	Kappa	N-ACETYL-D-GLUCOSAMINE	SAbDab (2026-03-27)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.